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fastMRI: An Open Dataset and Benchmarks for Accelerated MRI [PrePrint]
Zbontar, Jure; Knoll, Florian; Sriram, Anuroop; Murrell, Tullie; Huang, Zhengnan; Muckley, Matthew J; Defazio, Aaron; Stern, Ruben; Johnson, Patricia; Bruno, Mary; Parente, Marc; Geras, Krzysztof J; Katsnelson, Joe; Chandarana, Hersh; Zhang, Zizhao; Drozdzal, Michal; Romero, Adirana; Rabbat, Michael; Vincent, Pascal; Yakubova, Nafissa; Pinkerton, James; Wang, Duo; Owens, Erich; Zitnick, C Lawrence; Recht, Michael P; Sodickson, Daniel K; Lui, Yvonne W
Accelerating Magnetic Resonance Imaging (MRI) by taking fewer measurements has the potential to reduce medical costs, minimize stress to patients and make MRI possible in applications where it is currently prohibitively slow or expensive. We introduce the fastMRI dataset, a large-scale collection of both raw MR measurements and clinical MR images, that can be used for training and evaluation of machine-learning approaches to MR image reconstruction. By introducing standardized evaluation criteria and a freely-accessible dataset, our goal is to help the community make rapid advances in the state of the art for MR image reconstruction. We also provide a self-contained introduction to MRI for machine learning researchers with no medical imaging background
ORIGINAL:0014686
ISSN: 2331-8422
CID: 4534312
Exploring the sensitivity of magnetic resonance fingerprinting to motion
Yu, Zidan; Zhao, Tiejun; Assländer, Jakob; Lattanzi, Riccardo; Sodickson, Daniel K; Cloos, Martijn A
PURPOSE/OBJECTIVE:To explore the motion sensitivity of magnetic resonance fingerprinting (MRF), we performed experiments with different types of motion at various time intervals during multiple scans. Additionally, we investigated the possibility to correct the motion artifacts based on redundancy in MRF data. METHODS:A radial version of the FISP-MRF sequence was used to acquire one transverse slice through the brain. Three subjects were instructed to move in different patterns (in-plane rotation, through-plane wiggle, complex movements, adjust head position, and pretend itch) during different time intervals. The potential to correct motion artifacts in MRF by removing motion-corrupted data points from the fingerprints and dictionary was evaluated. RESULTS:values (-10% on average). CONCLUSION/CONCLUSIONS:Our experimental results showed that different kinds of motion have distinct effects on the precision and effective resolution of the parametric maps measured with MRF. Although MRF-based acquisitions can be relatively robust to motion effects occurring at the beginning or end of the sequence, relying on redundancy in the data alone is not sufficient to assure the accuracy of the multi-parametric maps in all cases.
PMID: 30193953
ISSN: 1873-5894
CID: 3274862
A highly decoupled transmit-receive array design with triangular elements at 7T
Chen, Gang; Zhang, Bei; Cloos, Martijn A; Sodickson, Daniel K; Wiggins, Graham C
PURPOSE/OBJECTIVE:profiles in the longitudinal (z) direction and allow for next-nearest neighbor decoupling. METHODS:Two cylindrical 8-channel arrays having the same length and diameter, 1 of triangular coils and the other of rectangular coils, were constructed and compared in phantom imaging experiments using measures of excitation distribution for a variety of RF shim settings and geometry factor maps for different accelerations on different planes. RESULTS:Coupling between elements was -20 dB or better for all triangular coil pairs, but worse than -12 dB for several of the rectangular coil pairs. Both coils could produce adequate shims on a central transverse plane, but the same shim produced worse results off center for the triangular coil array than for the rectangular coil array. Compared to the rectangular coil array, the maximum geometry factor for the triangular coil array was reduced by a factor of 13.1 when using a 2-fold acceleration in the z-direction. CONCLUSION/CONCLUSIONS:profiles along the z-direction, although this also means that individual slices must be shimmed separately. This design is well suited for parallel transmit applications while also having high receive sensitivity.
PMCID:6107369
PMID: 29572959
ISSN: 1522-2594
CID: 3001662
Hybrid T2 - and T1 -weighted radial acquisition for free-breathing abdominal examination
Benkert, Thomas; Mugler, John P; Rigie, David S; Sodickson, Daniel K; Chandarana, Hersh; Block, Kai Tobias
PURPOSE/OBJECTIVE:-weighted images from a single scan and allows for free-breathing acquisition. THEORY AND METHODS/UNASSIGNED:-weighted gradient-echo (GRE) data. Improved robustness is achieved by extracting a respiratory signal from the GRE data and using it for motion-weighted reconstruction. RESULTS:-weighted Dixon acquisition is possible. CONCLUSION/CONCLUSIONS:-weighted imaging in a single scan. In addition to free-breathing abdominal examination, it promises value for clinical applications that are frequently affected by motion artifacts.
PMCID:6107373
PMID: 29656522
ISSN: 1522-2594
CID: 3042912
An analytic expression for the ultimate intrinsic SNR in a uniform sphere
Lee, Hong-Hsi; Sodickson, Daniel K; Lattanzi, Riccardo
PURPOSE/OBJECTIVE:The ultimate intrinsic signal-to-noise ratio (UISNR) is normally calculated using electrodynamic simulations with a complete basis of modes. Here, we provide an exact solution for the UISNR at the center of a dielectric sphere and assess how accurately this solution approximates UISNR away from the center. METHODS:We performed a mode analysis to determine which modes contribute to central UISNR - ζ(r→0). We then derived an analytic expression to calculate ζ(r→0) and analyzed its dependence on main magnetic field strength, sample geometry, and electrical properties. We validated the proposed solution against an established method based on dyadic Green's function simulations. RESULTS:Only one divergence-free mode contributes to ζ(r→0). The UISNR given by the exact solution matched the full simulation results for various parameter settings, whereas calculation speed was approximately 1000 times faster. We showed that the analytic expression can approximate the UISNR with <5% error at positions as much as 10-20% of the radius away from the center. CONCLUSION/CONCLUSIONS:The proposed formula enables rapid and direct calculation of UISNR in the central region of a sphere. The resulting UISNR value may be used, for example, as an absolute reference to assess the performance of head coils with spherical phantoms.
PMCID:6107403
PMID: 29682800
ISSN: 1522-2594
CID: 3052972
Accuracy and precision of quantitative DCE-MRI parameters: How should one estimate contrast concentration?
Wake, Nicole; Chandarana, Hersh; Rusinek, Henry; Fujimoto, Koji; Moy, Linda; Sodickson, Daniel K; Kim, Sungheon Gene
INTRODUCTION/BACKGROUND:-weighted DCE-MRI. MATERIALS AND METHODS/METHODS:) and arterial input function (AIF). In addition, the effect of the conversion method on the diagnostic accuracy was evaluated with 36 breast lesions (19 benign and 17 malignant). RESULTS:. CONCLUSION/CONCLUSIONS:measurement is not available and a low FA is used for DCE-MRI, the uncertainty in the contrast kinetic parameter estimation can be reduced by using the LC method with pAIF, without compromising the diagnostic accuracy.
PMCID:6102067
PMID: 29777820
ISSN: 1873-5894
CID: 3121612
Publisher Correction: A high-impedance detector-array glove for magnetic resonance imaging of the hand
Zhang, Bei; Sodickson, Daniel K; Cloos, Martijn A
Owing to a technical error, this Article was originally published with an incorrect published online date of '4 May 2018'; it should have been '7 May 2018'. This has now been corrected.
PMID: 31015679
ISSN: 2157-846x
CID: 3821612
Transverse slot antennas for high field MRI
Alon, Leeor; Lattanzi, Riccardo; Lakshmanan, Karthik; Brown, Ryan; Deniz, Cem M; Sodickson, Daniel K; Collins, Christopher M
PURPOSE/OBJECTIVE:Introduce a novel coil design using an electrically long transversely oriented slot in a conductive sheet. THEORY AND METHODS/UNASSIGNED:Theoretical considerations, numerical simulations, and experimental measurements are presented for transverse slot antennas as compared with electric dipole antennas. RESULTS:Simulations show improved central and average transmit and receive efficiency, as well as larger coverage in the transverse plane, for a single slot as compared to a single dipole element. Experiments on a body phantom confirm the simulation results for a slot antenna relative to a dipole, demonstrating a large region of relatively high sensitivity and homogeneity. Images in a human subject also show a large imaging volume for a single slot and six slot antenna array. High central transmit efficiency was observed for slot arrays relative to dipole arrays. CONCLUSION/CONCLUSIONS:Transverse slots can exhibit improved sensitivity and larger field of view compared with traditional conductive dipoles. Simulations and experiments indicate high potential for slot antennas in high field MRI. Magn Reson Med, 2018. © 2018 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine. This is an open access article under the terms of the Creative Commons Attribution NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
PMCID:5985532
PMID: 29388250
ISSN: 1522-2594
CID: 2933852
Improved detection of fMRI activation in the cerebellum at 7T with dielectric pads extending the imaging region of a commercial head coil
Vaidya, Manushka V; Lazar, Mariana; Deniz, Cem M; Haemer, Gillian G; Chen, Gang; Bruno, Mary; Sodickson, Daniel K; Lattanzi, Riccardo; Collins, Christopher M
BACKGROUND:There is growing interest in detecting cerebro-cerebellar circuits, which requires adequate blood oxygenation level dependent contrast and signal-to-noise ratio (SNR) throughout the brain. Although 7T scanners offer increased SNR, coverage of commercial head coils is currently limited to the cerebrum. PURPOSE/OBJECTIVE:To improve cerebellar functional MRI (fMRI) at 7T with high permittivity material (HPM) pads extending the sensitivity of a commercial coil. STUDY TYPE/METHODS:Simulations were used to determine HPM pad configuration and assess radiofrequency (RF) safety. In vivo experiments were performed to evaluate RF field distributions and SNR and assess improvements of cerebellar fMRI. SUBJECTS/METHODS:Eight healthy volunteers enrolled in a prospective motor fMRI study with and without HPM. FIELD STRENGTH/SEQUENCE/UNASSIGNED:Gradient echo (GRE) echo planar imaging for fMRI, turbo FLASH for flip angle mapping, GRE sequence for SNR maps, and T1 -weighted MPRAGE were acquired with and without HPM pads at 7T. ASSESSMENT/RESULTS:Field maps, SNR maps, and anatomical images were evaluated for coverage. Simulation results were used to assess SAR levels of the experiment. Activation data from fMRI experiments were compared with and without HPM pads. STATISTICAL TESTS: fMRI data were analyzed using FEAT FSL for each subject followed by group level analysis using paired t-test of acquisitions with and without HPM. RESULTS:Simulations showed 52% improvement in transmit efficiency in cerebellum with HPM and SAR levels well below recommended limits. Experiments showed 27% improvement in SNR in cerebellum and improvement in coverage on T1 -weighted images. fMRI showed greater cerebellar activation in individual subjects with the HPM pad present (Z > = 4), especially in inferior slices of cerebellum, with 59% average increase in number of activated voxels in the cerebellum. Group-level analysis showed improved functional activation (Z > = 2.3) in cerebellar regions with HPM pads without loss of measured activation elsewhere. DATA CONCLUSION/UNASSIGNED:HPM pads can improve cerebellar fMRI at 7T with a commonly-used head coil without compromising RF safety. LEVEL OF EVIDENCE/METHODS:2 Technical Efficacy: Stage 1 J. Magn. Reson. Imaging 2017.
PMCID:6054823
PMID: 29357200
ISSN: 1522-2586
CID: 2917042
A high-impedance detector-array glove for magnetic resonance imaging of the hand
Zhang, Bei; Sodickson, Daniel K; Cloos, Martijn A
Densely packed resonant structures used for magnetic resonance imaging (MRI), such as nuclear magnetic resonance phased-array detectors, suffer from resonant inductive coupling, which restricts coil design to fixed geometries, imposes performance limitations, and narrows the scope of MRI experiments to motionless subjects. Here, we report the design of high-impedance detectors, and the fabrication and performance of a wearable detector array for MRI of the hand, that cloak themselves from electrodynamic interactions with neighboring elements. We experimentally verified that the detectors do not suffer from signal-to-noise degradation mechanisms typically observed with the use of traditional low-impedance elements. The detectors are adaptive and can accommodate movement, providing access to the imaging of soft-tissue biomechanics with unprecedented flexibility. The design of the wearable detector glove exemplifies the potential of high-impedance detectors in enabling a wide range of applications that are not well suited to traditional coil designs.
PMCID:6405230
PMID: 30854251
ISSN: 2157-846x
CID: 3726872