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Rapid and accurate T mapping from multi-spin-echo data using Bloch-simulation-based reconstruction

Ben-Eliezer, Noam; Sodickson, Daniel K; Block, Kai Tobias
PURPOSE: Quantitative T2 -relaxation-based contrast has the potential to provide valuable clinical information. Practical T2 -mapping, however, is impaired either by prohibitively long acquisition times or by contamination of fast multiecho protocols by stimulated and indirect echoes. This work presents a novel postprocessing approach aiming to overcome the common penalties associated with multiecho protocols, and enabling rapid and accurate mapping of T2 relaxation values. METHODS: Bloch simulations are used to estimate the actual echo-modulation curve (EMC) in a multi-spin-echo experiment. Simulations are repeated for a range of T2 values and transmit field scales, yielding a database of simulated EMCs, which is then used to identify the T2 value whose EMC most closely matches the experimentally measured data at each voxel. RESULTS: T2 maps of both phantom and in vivo scans were successfully reconstructed, closely matching maps produced from single spin-echo data. Results were consistent over the physiological range of T2 values and across different experimental settings. CONCLUSION: The proposed technique allows accurate T2 mapping in clinically feasible scan times, free of user- and scanner-dependent variations, while providing a comprehensive framework that can be extended to model other parameters (e.g., T1 , B1 + , B0 , diffusion) and support arbitrary acquisition schemes. Magn Reson Med, 2014. (c) 2014 Wiley Periodicals, Inc.
PMCID:4169365
PMID: 24648387
ISSN: 0740-3194
CID: 904092

Estimating Liver Perfusion From Free-Breathing Continuously Acquired Dynamic Gadolinium-Ethoxybenzyl-Diethylenetriamine Pentaacetic Acid-Enhanced Acquisition With Compressed Sensing Reconstruction

Chandarana, Hersh; Block, Tobias Kai; Ream, Justin; Mikheev, Artem; Sigal, Samuel H; Otazo, Ricardo; Rusinek, Henry
PURPOSE: The purpose of this study was to estimate perfusion metrics in healthy and cirrhotic liver with pharmacokinetic modeling of high-temporal resolution reconstruction of continuously acquired free-breathing gadolinium-ethoxybenzyl-diethylenetriamine pentaacetic acid-enhanced acquisition in patients undergoing clinically indicated liver magnetic resonance imaging. SUBJECTS AND METHODS: In this Health Insurance Portability and Accountability Act-compliant prospective study, 9 cirrhotic and 10 noncirrhotic patients underwent clinical magnetic resonance imaging, which included continuously acquired radial stack-of-stars 3-dimensional gradient recalled echo sequence with golden-angle ordering scheme in free breathing during contrast injection. A total of 1904 radial spokes were acquired continuously in 318 to 340 seconds. High-temporal resolution data sets were formed by grouping 13 spokes per frame for temporal resolution of 2.2 to 2.4 seconds, which were reconstructed using the golden-angle radial sparse parallel technique that combines compressed sensing and parallel imaging. High-temporal resolution reconstructions were evaluated by a board-certified radiologist to generate gadolinium concentration-time curves in the aorta (arterial input function), portal vein (venous input function), and liver, which were fitted to dual-input dual-compartment model to estimate liver perfusion metrics that were compared between cirrhotic and noncirrhotic livers. RESULTS: The cirrhotic livers had significantly lower total plasma flow (70.1 +/- 10.1 versus 103.1 +/- 24.3 mL/min per 100 mL; P < 0.05), lower portal venous flow (33.4 +/- 17.7 versus 89.9 +/- 20.8 mL/min per 100 mL; P < 0.05), and higher arterial perfusion fraction (52.0% +/- 23.4% versus 12.4% +/- 7.1%; P < 0.05). The mean transit time was higher in the cirrhotic livers (24.4 +/- 4.7 versus 15.7 +/- 3.4 seconds; P < 0.05), and the hepatocellular uptake rate was lower (3.03 +/- 2.1 versus 6.53 +/- 2.4 100/min; P < 0.05). CONCLUSIONS: Liver perfusion metrics can be estimated from free-breathing dynamic acquisition performed for every clinical examination without additional contrast injection or time. This is a novel paradigm for dynamic liver imaging.
PMCID:4286452
PMID: 25333309
ISSN: 0020-9996
CID: 1316222

Self-gated MRI motion modeling for respiratory motion compensation in integrated PET/MRI

Grimm, Robert; Furst, Sebastian; Souvatzoglou, Michael; Forman, Christoph; Hutter, Jana; Dregely, Isabel; Ziegler, Sibylle I; Kiefer, Berthold; Hornegger, Joachim; Block, Kai Tobias; Nekolla, Stephan G
Accurate localization and uptake quantification of lesions in the chest and abdomen using PET imaging is challenged by respiratory motion occurring during the exam. This work describes how a stack-of-stars MRI acquisition on integrated PET/MRI systems can be used to derive a high-resolution motion model, how many respiratory phases need to be differentiated, how much MRI scan time is required, and how the model is employed for motion-corrected PET reconstruction. MRI self-gating is applied to perform respiratory gating of the MRI data and simultaneously acquired PET raw data. After gated PET reconstruction, the MRI motion model is used to fuse the individual gates into a single, motion-compensated volume with high signal-to-noise ratio (SNR). The proposed method is evaluated in vivo for 15 clinical patients. The gating requires 5-7 bins to capture the motion to an average accuracy of 2mm. With 5 bins, the motion-modeling scan can be shortened to 3-4 min. The motion-compensated reconstructions show significantly higher accuracy in lesion quantification in terms of standardized uptake value (SUV) and different measures of lesion contrast compared to ungated PET reconstruction. Furthermore, unlike gated reconstructions, the motion-compensated reconstruction does not lead to SNR loss.
PMID: 25461331
ISSN: 1361-8415
CID: 1457362

The rapid imaging renaissance: sparser samples, denser dimensions, and glimmerings of a grand unified tomography [Meeting Abstract]

Sodickson, Daniel K; Feng, Li; Knoll, Florian; Cloos, Martijn; Ben-Eliezer, Noam; Axel, Leon; Chandarana, Hersh; Block, Tobias; Otazo, Ricardo
The task of imaging is to gather spatiotemporal information which can be organized into a coherent map. Tomographic imaging in particular involves the use of multiple projections, or other interactions of a probe (light, sound, etc.) with a body, in order to determine cross-sectional information. Though the probes and the corresponding imaging modalities may vary, and though the methodology of particular imaging approaches is in constant ferment, the conceptual underpinnings of tomographic imaging have in many ways remained fixed for many decades. Recent advances in applied mathematics, however, have begun to roil this intellectual landscape. The advent of compressed sensing, anticipated in various algorithms dating back many years but unleashed in full theoretical force in the last decade, has changed the way imagers have begun to think about data acquisition and image reconstruction. The power of incoherent sampling and sparsity-enforcing reconstruction has been demonstrated in various contexts and, when combined with other modern fast imaging techniques, has enabled unprecedented increases in imaging efficiency. Perhaps more importantly, however, such approaches have spurred a shift in perspective, prompting us to focus less on nominal data sufficiency than on information content. Beginning with examples from MRI, then proceeding through selected other modalities such as CT and PET, as well as multimodality combinations, this paper explores the potential of newly evolving acquisition and reconstruction paradigms to change the way we do imaging in the lab and in the clinic.
ISI:000355665600014
ISSN: 0277-786x
CID: 2061802

Contrast-Enhanced Radial 3D Fat-Suppressed T1-Weighted Gradient-Recalled Echo Sequence Versus Conventional Fat-Suppressed Contrast-Enhanced T1-Weighted Studies of the Head and Neck

Wu, Xin; Raz, Eytan; Block, Tobias K; Geppert, Christian; Hagiwara, Mari; Bruno, Mary T; Fatterpekar, Girish M
OBJECTIVE. Traditional fat-suppressed T1-weighted spin-echo or turbo spin-echo (TSE) sequences (T1-weighted images) may be degraded by motion and pulsation artifacts in head-and-neck studies. Our purpose is to evaluate the role of a fat-suppressed T1-weighted 3D radial gradient-recalled echo sequence (radial-volumetric interpolated breath-hold examination [VIBE]) in the head and neck as compared with standard contrast-enhanced fat-suppressed T1-weighted images. MATERIALS AND METHODS. We retrospectively evaluated 21 patients (age range, 9-67 years) who underwent head-and-neck MRI at 1.5 T. Both contrast-enhanced radial-VIBE and conventional fat-suppressed TSE contrast-enhanced T1-weighted imaging were performed. Two radiologists evaluated multiple parameters of image quality, graded on a 5-point scale. Mixed-model analysis of variance and interobserver variability assessment were performed. RESULTS. The following parameters were scored as significantly better for the contrast-enhanced radial-VIBE sequence than for conventional contrast-enhanced T1-weighted imaging: overall image quality (p < 0.0001), degree of fat suppression (p = 0.006), mucosal enhancement (p = 0.004), muscle edge clarity (p = 0.049), vessel clarity (p < 0.0001), respiratory motion artifact (p = 0.002), pulsation artifact (p < 0.0001), and lesion edge sharpness (p = 0.004). Interobserver agreement in qualitative evaluation of the two sequences showed fair-to-good agreement for the following variables: overall image quality (intraclass correlation coefficient [ICC], 0.779), degree of fat suppression (ICC, 0.716), mucosal enhancement (ICC, 0.693), muscle edge clarity (ICC, 0.675), respiratory motion artifact (ICC, 0.516), lesion enhancement (ICC, 0.410), and lesion edge sharpness (ICC, 0.538). Excellent agreement was shown for vessel clarity (ICC, 0.846) and pulsation artifact (ICC, 0.808). CONCLUSION. The radial-VIBE sequence is a viable motion-robust improvement on the conventional fat-suppressed T1-weighted sequence.
PMID: 25247956
ISSN: 0361-803x
CID: 1252482

Joint reconstruction of simultaneously acquired MR-PET data with multi sensor compressed sensing based on a joint sparsity constraint

Knoll, Florian; Koesters, Thomas; Otazo, Ricardo; Block, Tobias; Feng, Li; Vunckx, Kathleen; Faul, David; Nuyts, Johan; Boada, Fernando; Sodickson, Daniel K
PMCID:4545956
PMID: 26501612
ISSN: 2197-7364
CID: 1816702

Improved FDG kinetic analysis in brain tumors through simultaneous MR/PET acquisition [Meeting Abstract]

Vahle, Anne-Kristin; Koesters, Thomas; Mikheev, Artem; Logan, Jean; Fatterpekar, Girish; Shepherd, Timothy; Glielmi, Christopher; Block, Kai Tobias; Faul, David; Boada, Fernando
ISI:000361438100505
ISSN: 1535-5667
CID: 2544642

Combination of Increased Flip Angle, Radial k-Space Trajectory, and Free Breathing Acquisition for Improved Detection of a Biliary Variant at Living Donor Liver Transplant Evaluation Using Gadoxetic Acid-Enhanced MRCP

Rosenkrantz, Andrew B; Block, Tobias K; Hindman, Nicole; Vega, Emilio; Chandarana, Hersh
Gadoxetic acid-enhanced magnetic resonance cholangiopancreatography (MRCP) was performed for evaluation of living donor liver transplantation. T2-weighted MRCP and hepatobiliary-phase postcontrast MRCP showed an aberrant right posterior bile duct, although the precise variant was uncertain. Optimized hepatobiliary-phase MRCP was obtained using 3 sequence modifications: increased flip angle to improve contrast between the biliary tree and surrounding tissues; radial k-space sampling to minimize motion artifact; and free-breathing acquisition to improve signal-to-noise ratio and, in turn, spatial resolution (resolution of 1.28 x 1.28 x 1.5 mm). The optimized sequence demonstrated that the right posterior bile duct drained into the cystic duct, consistent with type 3C biliary variant, thus modifying surgical planning.
PMID: 24625601
ISSN: 0363-8715
CID: 851902

Free-breathing contrast-enhanced T1-weighted gradient-echo imaging with radial k-space sampling for paediatric abdominopelvic MRI

Chandarana, Hersh; Block, Kai T; Winfeld, Matthew J; Lala, Shailee V; Mazori, Daniel; Giuffrida, Emalyn; Babb, James S; Milla, Sarah S
OBJECTIVE: To compare the image quality of contrast-enhanced abdominopelvic 3D fat-suppressed T1-weighted gradient-echo imaging with radial and conventional Cartesian k-space acquisition schemes in paediatric patients. METHODS: Seventy-three consecutive paediatric patients were imaged at 1.5 T with sequential contrast-enhanced T1-weighted Cartesian (VIBE) and radial gradient echo (GRE) acquisition schemes with matching parameters when possible. Cartesian VIBE was acquired as a breath-hold or as free breathing in patients who could not suspend respiration, followed by free-breathing radial GRE in all patients. Two paediatric radiologists blinded to the acquisition schemes evaluated multiple parameters of image quality on a five-point scale, with higher score indicating a more optimal examination. Lesion presence or absence, conspicuity and edge sharpness were also evaluated. Mixed-model analysis of variance was performed to compare radial GRE and Cartesian VIBE. RESULTS: Radial GRE had significantly (all P < 0.001) higher scores for overall image quality, hepatic edge sharpness, hepatic vessel clarity and respiratory motion robustness than Cartesian VIBE. More lesions were detected on radial GRE by both readers than on Cartesian VIBE, with significantly higher scores for lesion conspicuity and edge sharpness (all P < 0.001). CONCLUSION: Radial GRE has better image quality and lesion conspicuity than conventional Cartesian VIBE in paediatric patients undergoing contrast-enhanced abdominopelvic MRI. KEY POINTS: * Numerous techniques are required to provide optimal MR images in paediatric patients. * Radial free-breathing contrast-enhanced acquisition demonstrated excellent image quality. * Image quality and lesion conspicuity were better with radial than Cartesian acquisition. * More lesions were detected on contrast-enhanced radial than on Cartesian acquisition. * Radial GRE can be used for performing abdominopelvic MRI in paediatric patients.
PMID: 24220754
ISSN: 0938-7994
CID: 620182

Simultaneous MR-PET reconstruction using multi sensor compressed sensing and joint sparsity [Meeting Abstract]

Knoll, Florian; Koesters, Thomas; Otazo, Ricardo; Block, Tobias; Feng, Li; Vunckx, Kathleen; Faul, Daniel; Nuyts, Johan; Boada, Fernando; Sodickson, Daniel K
ORIGINAL:0014694
ISSN: 1524-6965
CID: 4534402