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A model-based reconstruction for undersampled radial spin-echo DTI with variational penalties on the diffusion tensor
Knoll, Florian; Raya, Jose G; Halloran, Rafael O; Baete, Steven; Sigmund, Eric; Bammer, Roland; Block, Tobias; Otazo, Ricardo; Sodickson, Daniel K
Radial spin-echo diffusion imaging allows motion-robust imaging of tissues with very low T2 values like articular cartilage with high spatial resolution and signal-to-noise ratio (SNR). However, in vivo measurements are challenging, due to the significantly slower data acquisition speed of spin-echo sequences and the less efficient k-space coverage of radial sampling, which raises the demand for accelerated protocols by means of undersampling. This work introduces a new reconstruction approach for undersampled diffusion-tensor imaging (DTI). A model-based reconstruction implicitly exploits redundancies in the diffusion-weighted images by reducing the number of unknowns in the optimization problem and compressed sensing is performed directly in the target quantitative domain by imposing a total variation (TV) constraint on the elements of the diffusion tensor. Experiments were performed for an anisotropic phantom and the knee and brain of healthy volunteers (three and two volunteers, respectively). Evaluation of the new approach was conducted by comparing the results with reconstructions performed with gridding, combined parallel imaging and compressed sensing and a recently proposed model-based approach. The experiments demonstrated improvements in terms of reduction of noise and streaking artifacts in the quantitative parameter maps, as well as a reduction of angular dispersion of the primary eigenvector when using the proposed method, without introducing systematic errors into the maps. This may enable an essential reduction of the acquisition time in radial spin-echo diffusion-tensor imaging without degrading parameter quantification and/or SNR
PMCID:4339452
PMID: 25594167
ISSN: 0952-3480
CID: 1436482
Simultaneous MR-PET reconstruction using multi sensor compressed sensing and joint sparsity [Meeting Abstract]
Knoll, Florian; Koesters, Thomas; Otazo, Ricardo; Block, Tobias; Feng, Li; Vunckx, Kathleen; Faul, Daniel; Nuyts, Johan; Boada, Fernando; Sodickson, Daniel K
ORIGINAL:0014694
ISSN: 1524-6965
CID: 4534402
gpuNUFFT - An open source GPU library for 3D regridding with direct Matlab interface [Meeting Abstract]
Knoll, Florian; Schwarzl, Andreas; Diwoky, Clemens; Sodickson, Daniel K
ORIGINAL:0014691
ISSN: 1065-9889
CID: 4534372
A Fast Method to Estimate SAR Distribution from Temperature Images Highly Affected by Noise [Meeting Abstract]
Carluccio, Giuseppe; Knoll, Florian; Deniz, Cem Murat; Alon, Leeor; Collins, Chistopher Michael
ORIGINAL:0014708
ISSN: 1524-6965
CID: 4534582
Combination of a radial sequence for in vivo DTI of articular cartilage with an iterative model-based reconstruction [Meeting Abstract]
Raya, Jose G; Knoll, Florian; Burcaw, Lauren; Milani, Sina; Sodickson, Daniel K; Block, Kai Tobias
ORIGINAL:0014712
ISSN: 1524-6965
CID: 4534622
Joint reconstruction of simultaneously acquired MR-PET data with multi sensor compressed sensing based on a joint sparsity constraint
Knoll, Florian; Koesters, Thomas; Otazo, Ricardo; Block, Tobias; Feng, Li; Vunckx, Kathleen; Faul, David; Nuyts, Johan; Boada, Fernando; Sodickson, Daniel K
PMCID:4545956
PMID: 26501612
ISSN: 2197-7364
CID: 1816702
Fast T2 mapping with improved accuracy using undersampled spin-echo MRI and model-based reconstructions with a generating function
Sumpf, Tilman J; Petrovic, Andreas; Uecker, Martin; Knoll, Florian; Frahm, Jens
A model-based reconstruction technique for accelerated T2 mapping with improved accuracy is proposed using undersampled Cartesian spin-echo magnetic resonance imaging (MRI) data. The technique employs an advanced signal model for T2 relaxation that accounts for contributions from indirect echoes in a train of multiple spin echoes. An iterative solution of the nonlinear inverse reconstruction problem directly estimates spin-density and T2 maps from undersampled raw data. The algorithm is validated for simulated data as well as phantom and human brain MRI at 3T. The performance of the advanced model is compared to conventional pixel-based fitting of echo-time images from fully sampled data. The proposed method yields more accurate T2 values than the mono-exponential model and allows for retrospective undersampling factors of at least 6.Although limitations are observed for very long T2 relaxation times, respective reconstruction problems may be overcome by a gradient dampening approach. The analytical gradient of the utilized cost function is included as appendix. The source code is made available to the community.
PMCID:4469336
PMID: 24988592
ISSN: 0278-0062
CID: 1499322
Quantitative Evaluation of 3D Variational Regularized Reconstruction of Undersampled Diffusion Tensor Imaging [Meeting Abstract]
Knoll, Florian; O'Halloran Rafael; Bredies, Kristian; Stollberger, Rudolf; Bammer, Roland
PURPOSE–DTI acquisitions take a long time. Undersampling reduces scan time but leads to artifacts with normal reconstruction. Parallel imaging with nonlinear variational constraints has been shown to reduce artifacts in reconstruction of undersampled data [1, 2]. However, the effects of nonlinear regularization methods on quantitative evaluation of DTI data are not well studied. Here the quantitative accuracy of a 3D spiral acquisition using 3D second order Total Generalized Variation (TGV2) as a penalty term is evaluated in a simulated atlas-based DTI phantom. Reconstructed values of the FA and principle eigenvector direction were compared for different noise levels
ORIGINAL:0014722
ISSN: 1524-6965
CID: 4535142
Iterative Image reconstruction for accelerated MR-Imaging: Mathematics meets Radiology
Knoll, Florian; Clason, C; Bredies, K; Stollberger, R
ORIGINAL:0014684
ISSN: 1439-099x
CID: 4534292
Accelerated 3D radial imaging with 3D variational regularization [Meeting Abstract]
Knoll, Florian; Block, Kai Tobias; Bredies, Kristian; Diwoky, Clemens; Axel, Leon; Sodickson, Daniel K; Stollberger, Rudolf
ORIGINAL:0014699
ISSN: 1524-6965
CID: 4534492