Faculty Bibliography

Full congener-specific polychorinated biphenyl (PCB) and partial-congener-specific polychorinated dibenzo-p-dioxin/furan (PCDD/F) analyses were performed on livers from young-of-the-year (YOY) and adult Atlantic tomcod from the Hudson River estuary including multiple sites along the main-stem Hudson River and Newark Bay/Hackensack River, NJ, and from a reference river, the Miramichi River, NB. Highest hepatic burdens of PCBs were found in fish collected in the main-stem Hudson River between river miles (RM) 37 and 50 and in Newark Bay/Hackensack River. By far, the highest concentrations of PCDD/Fs were seen in fish from Newark Bay/Hackensack River. The di- to tetrachlorinated biphenyls dominated the PCB composition in YOY tomcod, whereas the penta- to nonachlorinated biphenyls predominated in adults with particular prevalence of the 2,4,5-substituted diortho congeners. Overall, using a direct mixing model an aroclor composition of approximate 1:1:1, A1242:A1254:A1260, was calculated from the hepatic PCB profiles in YOY tomcod. A linear increase in A1242 characteristics with river mile was seen in YOY collected between RM 0 and RM 80, which was likely due to the well-characterized A1242 source from the former capacitor manufacturing plants located upriver. However, tomcod caught upstream of RM 80 exhibited a PCB pattern with decreasing A1242 characteristics, and it was hypothesized that this was due to the increased depuration or decreased uptake of low chlorinated (log K(OW) < 6) congeners upon entry of the fish into freshwater from brackish water. The most abundant tetra-octa PCDD/F chlorohomologue in tomcod collected from the main stem of the Hudson River was TCDF, whereas 2,3,7,8-TCDD was the major congener detected in tomcod from Newark Bay/Hackensack River, which showed elevated total PCDD/F levels compared to tomcod from the main-stem Hudson River

The parasitic sea lamprey Petromyzon marinus occurs throughout North America's Great Lakes, where it has an immense economic impact on commercially and recreationally important fishes. Sea lampreys indisputably invaded Lake Erie and the upper Great Lakes from Lake Ontario in the mid-1900s, but their official status as a normative species in Lake Ontario is based on circumstantial evidence and has long been subject to controversy. Presently, sea lampreys are considered by U.S. and Canadian government agencies to be an invasive species within the entire Great Lakes watershed, and millions of dollars are spent annually to suppress them. We sequenced 330 base pairs of the mitochondrial DNA control region of 224 sea lampreys collected from 10 locations (3 within the Lake Ontario drainage, 2 within the Lake Superior drainage, and 5 rivers between Quebec and New York that are tributary to the Atlantic Ocean). Eighteen haplotypes were revealed, of which 17 occurred in specimens from Atlantic coast rivers, 6 in specimens from Lake Ontario, and 2 in specimens from Lake Superior tributaries. Haplotype frequencies were not significantly different (P > 0.05) within regions, indicating low or no homing fidelity. But when haplotype frequencies were grouped within regions and compared along the hypothesized colonization pathway, significant differences were seen. Pronounced differences in haplotype frequency patterns between Atlantic coast and Lake Ontario drainage collections, together with arguments against the viability of canal passage, strongly support the idea of post-Pleistocene natural colonization by one of at least three hypothesized zoogeographic pathways. If sea lampreys are indigenous to Lake Ontario, management policies aimed toward intense suppression might need reevaluation

Atlantic sturgeon Acipenser oxyrinchus is large, long-lived, and anadromous with subspecies distributed along the Atlantic ( A. oxyrinchus oxyrinchus) and Gulf of Mexico (A. o. desotoi) coasts of North America. Although it is not certain if extirpation of some population units has occurred, because of anthropogenic influences abundances of all populations are low compared with historical levels. Informed management of A. oxyrinchus demands detailed knowledge of its population structure, levels of genetic diversity, and likelihood to home to natal rivers. We compared the use of mitochondrial DNA ( mtDNA) control region sequence and microsatellite nuclear DNA (nDNA) analyses in identifying the stock structure and homing fidelity of Atlantic and Gulf coast populations of A. oxyrinchus. The approaches were concordant in that they revealed moderate to high levels of genetic diversity and suggested that populations of Atlantic sturgeon are highly structured. At least six genetically distinct management units were detected using the two approaches among the rivers surveyed. Mitochondrial DNA sequences revealed significant cline in haplotype diversity along the Atlantic coast with monomorphism observed in Canadian populations. High levels of nDNA diversity were also observed among populations along the Atlantic coast, including the two Canadian populations, probably resulting from the more rapid rate of mutational and evolutionary change at microsatellite loci. Estimates of gene flow among populations were similar between both approaches with the exception that because of mtDNA monomorphism in Canadian populations, gene flow estimates between them were unobtainable. Analyses of both genomes provided high resolution and confidence in characterizing the population structure of Atlantic sturgeon. Microsatellite analysis was particularly informative in delineating population structure in rivers that were recently glaciated and may prove diagnostic in rivers that are geographically proximal along the south Atlantic coast of the US

Non-genetic data indicate that Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus) are substantially dispersive in marine waters, possibly remaining out of their natal rivers for many years at a time. Gulf sturgeon (A. o. desotoi) only appear to use marine waters during cooler months, summering in rivers. Shortnose sturgeon (A. brevirostrum) are highly residential in rivers, but do sometimes go to sea and move between rivers. We used the polymerase chain reaction (PCR) and direct sequence analysis of a portion of the mitochondrial DNA ( mtDNA) control region to examine stock structure, haplotypic diversity, and gene flow (N-fm) among these taxa, hypothesizing that gene flow would be highest in Atlantic sturgeon. Stock structuring was strong within all three taxa most river populations supported genetically distinct stocks of sturgeons. Estimates of gene flow among regions were low to moderate in comparison with other anadromous fishes, suggesting that homing fidelity within all three taxa is high. However, average gene flow in Atlantic sturgeon was almost three times higher than in shortnose sturgeon, which somewhat exceeded gene flow values for Gulf sturgeon. Levels and patterns of haplotype diversity differed dramatically between the largely-sympatric Atlantic and shortnose sturgeon. Atlantic sturgeon exhibited a cline in haplotype diversity with monomorphism or very low diversity observed in northern, previously glaciated populations and moderate to high levels of diversity in southern, non-glaciated populations. In contrast, no difference in haplotype diversity and little sharing of haplotypes was observed between northern and southern populations of shortnose sturgeon. We hypothesize that the greater mtDNA diversity in northern populations of shortnose sturgeon resulted from their use of a glacial refugium that was not occupied by Atlantic sturgeon. Gulf sturgeon show much lower gene flow than Atlantic sturgeon. This may be due to their more temporally and geographically constrained marine migrations, which may reduce the opportunities for straying, and a need to return to assured summer thermal refugia. A new finding is the probable existence of a native, genetically-distinct Atlantic sturgeon stock in the James River, which has rami cations for restoration strategies for the species in Chesapeake Bay

Shortnose sturgeon is an anadromous North American acipenserid that since 1973 has been designated as federally endangered in US waters. Historically, shortnose sturgeon occurred in as many as 19 rivers from the St. John River, NB, to the St. Johns River, FL, and these populations ranged in census size from 10(1) to 10(4), but little is known of their population structure or levels of gene flow. We used the polymerase chain reaction (PCR) and direct sequence analysis of a 440 bp portion of the mitochondrial DNA (mtDNA) control region to address these issues and to compare haplotype diversity with population size. Twenty-nine mtDNA nucleotide-substitution haplotypes were revealed among 275 specimens from 11 rivers and estuaries. Additionally, mtDNA length variation (6 haplotypes) and heteroplasmy (2-5 haplotypes for some individuals) were found. Significant genetic differentiation (P < 0.05) of mtDNA nucleotide-substitution haplotypes and length-variant haplotypes was observed among populations from all rivers and estuaries surveyed with the exception of the Delaware River and Chesapeake Bay collections. Significant haplotype differentiation was even observed between samples from two rivers (Kennebec and Androscoggin) within the Kennebec River drainage. The absence of haplotype frequency differences between samples from the Delaware River and Chesapeake Bay reflects a probable current absence of spawning within the Chesapeake Bay system and immigration of fish from the adjoining Delaware River. Haplotypic diversity indices ranged between 0.817 and 0.641; no relationship (P > 0.05) was found between haplotype diversity and census size. Gene flow estimates among populations were often low (< 2.0), but were generally higher at the latitudinal extremes of their distribution. A moderate level of haplotype diversity and a high percentage (37.9%) of haplotypes unique to the northern, once-glaciated region suggests that northern populations survived the Pleistocene in a northern refugium. Analysis of molecular variance best supported a five-region hierarchical grouping of populations, but our results indicate that in almost all cases populations of shortnose sturgeon should be managed as separate units

In fish, the embryos and larvae are the life-stages most sensitive to damage from environmentally borne dioxin-like compounds and polycyclic aromatic hydrocarbons (PAHs). Methods are not routinely available to measure the body burdens of contaminants in embryos and larvae, thus precluding the investigation of links between exposure and biological effects. Quantification of expression of cytochrome P4501A1 (CYP1A1) provides an index of relative exposure of natural populations to bioavailable aromatic hydrocarbons (AH) and an initial evaluation of their biological effects. We developed a quantitative approach to standardize total RNA loading and then used competitive reverse transcriptase-polymerase chain reaction (RT-PCR) to quantify the CYP1A1 mRNA expression in environmentally exposed Atlantic tomcod (Microgadus tomcod) post yolk-sac larvae (postlarvae) from the Hudson River, New York, and in chemically treated postlarval offspring of controlled laboratory crosses of Hudson River parents. Significant induction of CYP1A1 expression was observed in tomcod postlarvae exposed to waterborne 3,3',4,4'-tetrachlorobiphenyl (PCB 77) (four-fold) and benzo[a]-pyrene (eight-fold) compared with vehicle-exposed controls. In contrast, CYP1A1 was not induced in Hudson River-exposed postlarvae compared with vehicle-exposed controls. This study demonstrates the feasibility of using competitive RT-PCR for the measurement of gene expression in environmentally exposed larvae of sentinel species, and is consistent with the hypothesis that postlarvae exposed to the Hudson River environment have not bioaccumulated sufficient levels of AHs to induce CYP1A1 expression. The high levels of hepatic CYP1A1 mRNA expression previously reported in 5-8 month old juvenile tomcod from the Hudson River coincides with their descent to the benthic habitat and the onset of independent feeding on AH-contaminated benthic prey

The two species of Atlantic sea sturgeon on either shore of the North Atlantic, Acipenser sturio in Europe and A. oxyrinchus in North America, probably diverged with the closure of the Tethys Sea and the onset of the North Atlantic Gyre 15-20 million years ago, and contact between them was then presumably precluded by geographic distance. Here we present genetic, morphological and archaeological evidence indicating that the North American sturgeon colonized the Baltic during the Middle Ages and replaced the native sturgeon there, before recently becoming extinct itself in Europe as a result of human activities. In addition to representing a unique transatlantic colonization event by a fish that swims upriver to spawn, our findings have important implications for projects aimed at restocking Baltic waters with the European sturgeon

Adult Atlantic tomcod, Microgadus tomcod, from the Hudson River, New York State, USA, exhibit reduced inducibility of hepatic cytochrome P4501A1 (CYP1A1) mRNA compared with adult tomcod from the cleaner Miramichi River, New Brunswick, Canada, when treated with coplanar polychlorinated biphenyl (PCB) congeners or 2,3,7,8-tetrachlorodibenzo-p-dioxin. In contrast, little difference in CYP1A1 inducibility is observed between tomcod from these two rivers when treated with polycyclic aromatic hydrocarbons (PAHs). We sought to determine if impaired hepatic CYP1A1 inducibility in Hudson River tomcod results from a multigenerational, genetic adaptation or a single generational, physiological acclimation. Embryos and larvae from controlled experimental crosses of Hudson River and Miramichi River parents were exposed for 24 h to water-borne PCB congener 77 (10 ppm), benzo[a]pyrene (BaP; 10 ppm), or dimethysulfoxide, and CYP1A1 expression was assessed in individual larva using competitive reverse transcriptase polymerase chain reaction (RT-PCR) analysis. The CYP1A1 mRNA was significantly induced in larvae from both populations by BaP (47- and 52-fold) and PCB 77 (9- and 22-fold), although levels of expression were higher in offspring of Miramichi matings. Most important, CYP1A1 mRNA was significantly induced by PCB 77 in larvae from Hudson River parents. Concentrations of dioxin, furan, and PCB congeners were measured in livers and eggs of female tomcod from these two locales to quantify the extent of maternal transfer of contaminants. For both rivers, wet-weight contaminant concentrations were significantly higher (4-7 times) in livers than in eggs of the same females, suggesting that a threshold level of contaminants may have to be reached before CYP1A1 transcription is impaired. We conclude that reduced inducibility of hepatic CYP1A1 mRNA in adult tomcod from the Hudson River is most consistent with single-generational acclimation

Hepatic cytochrome P4501A1 (CYP1A1) expression in fishes is frequently used to evaluate bioavailable aromatic hydrocarbon contamination of aquatic ecosystems. In controlled laboratory experiments, CYP1A1 expression in naive fishes is usually dose-responsive to aromatic hydrocarbons and in field studies levels of gene expression in natural populations often correspond with known levels of sediment-borne contaminants. We quantified CYP1A1 mRNA levels in juvenile Atlantic tomcod Microgadus tomcod from 42 sites in the Hudson River estuary to evaluate the correspondence between hepatic CYP1A1 expression and hepatic concentrations of persistent halogenated aromatic hydrocarbons and to determine the utility of CYP1A1 expression as a biomarker in evaluating the microgeographic distribution of bioavailable contaminants within a large aquatic ecosystem. We found significant spatial heterogeneity in CYP1A1 mRNA levels among collection sites with levels of gene expression differing in some cases by 23-34 folds. CYP1A1 mRNA expression was highest in tomcod from the Newark Bay complex and lowest in tomcod from the most upriver collection sites in the main stem of the Hudson River. Although levels of PCDDs, PCDFs, and PCBs expressed as TCDD TEQs and CYP1A1 mRNA were highest in tomcod from the Newark Bay complex, there was no relationship between hepatic halogenated aromatic hydrocarbon levels and hepatic CYP1A1 mRNA in tomcod from sites in the main stem of the Hudson River. These results suggest that levels of CYP1A1 expression in fish from sites highly polluted with mixtures of halogenated aromatic hydrocarbons and other xenobiotics may not always be reflective of levels of bioavailable aromatic hydrocarbon contaminants. Based on these results and earlier controlled laboratory experiments, we hypothesize that elevated levels of CYP1A1 expression in tomcod from the Hudson River may be due primarily to PAHs or other contaminants not measured in this study

A Memorandum of Understanding, which formed the Robust Redhorse Conservation Committee (RRCC), was developed and adopted by concerned stakeholders in Georgia, South Carolina, and North Carolina to attempt recovery of the recently 'rediscovered,' and rare, robust redhorse Moxostoma robustum, As part of the con servation program, genetic analyses of robust redhorse populations were needed to facilitate responsible hatchery programs that could be used to supplement natural reproduction in declining populations and to reestablish populations in rivers in which it may have historically been present. We analyzed mtDNA control region sequences in robust redhorse from the Oconee and Ocmulgee Rivers in the Altamaha River drainage and the Savannah River to determine the genetic relatedness of these populations to guide restoration efforts. Fixed differences in mtDNA haplotypes were found between robust redhorse from the two drainages that strongly argues for the designation of these populations as Evolutionarily Significant Units and against the interstock transfer of fish. Further studies will be needed to evaluate the full significance of these differences and associated management implications