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Enhanced delineation of white matter structures of the fixed mouse brain using Gd-DTPA in microscopic MRI
Kim, Sungheon; Pickup, Stephen; Hsu, Oliver; Poptani, Harish
The purpose of this study was to investigate the effect of gadolinium (III) diethyltriaminepenta-acetic acid (Gd-DTPA) mixed with a fixative on the image contrast between the white and gray matter of the perfusion-fixed mouse brain. A series of microscopic MRI (microMRI) studies using different concentrations of Gd-DTPA were performed at multiple time points to determine the optimal Gd-DTPA concentration and fixation time necessary to maximize the contrast-to-noise ratio between the white and gray matter with relatively short scan time using a three-dimensional gradient-echo pulse sequence. On the basis of the experimental results, high-resolution (39 microm isotropic) images with excellent contrast-to-noise ratio ( approximately 50) were acquired in less than 2 h of scan time after the specimen had been soaked in 10 mM Gd-DTPA for 4 days. Excellent correlation was noted between microMRI and histology in that the microMRI clearly depicted brain regions that were also observed by the Kluver-Barrera stain. The enhanced contrast between the white and gray matter obtained by the proposed microMRI method may facilitate the development of microMRI-based morphological phenotyping methods for mouse models of neurological disorders.
PMID: 19039800
ISSN: 0952-3480
CID: 240132
Diffusion-weighted magnetic resonance imaging for predicting and detecting early response to chemoradiation therapy of squamous cell carcinomas of the head and neck
Kim, Sungheon; Loevner, Laurie; Quon, Harry; Sherman, Eric; Weinstein, Gregory; Kilger, Alex; Poptani, Harish
PURPOSE: The aim of this study was to investigate the utility of apparent diffusion coefficient (ADC) for prediction and early detection of treatment response in head and neck squamous cell carcinomas (HNSCC). EXPERIMENTAL DESIGN: Diffusion-weighted magnetic resonance imaging studies were performed on 40 patients with newly diagnosed HNSCC before, during, and after the end of chemoradiation therapy. Analysis was done on data from 33 patients after exclusion of 7 patients that had incomplete data. RESULTS: Pretreatment ADC value of complete responders (1.04 +/- 0.19 x 10(-3) mm2/s) was significantly lower (P < 0.05) than that from partial responders (1.35 +/- 0.30 x 10(-3) mm2/s). A significant increase in ADC was observed in complete responders within 1 week of treatment (P < 0.01), which remained high until the end of the treatment. The complete responders also showed significantly higher increase in ADC than the partial responders by the first week of chemoradiation (P < 0.01). When pretreatment ADC value was used for predicting treatment response, the area under the receiver operating characteristic curve was 0.80 with a sensitivity of 65% and a specificity of 86%. However, change in ADC within the first week of chemoradiation therapy resulted in an area under the receiver operating characteristic curve of 0.88 with 86% sensitivity and 83% specificity for prediction of treatment response. CONCLUSIONS: These results suggest that ADC can be used as a marker for prediction and early detection of response to concurrent chemoradiation therapy in HNSCC.
PMCID:2673914
PMID: 19188170
ISSN: 1078-0432
CID: 240122
Differentiation between glioblastomas and solitary brain metastases using diffusion tensor imaging
Wang, Sumei; Kim, Sungheon; Chawla, Sanjeev; Wolf, Ronald L; Zhang, Wei-Guo; O'Rourke, Donald M; Judy, Kevin D; Melhem, Elias R; Poptani, Harish
The purpose of this study is to determine whether diffusion tensor imaging (DTI) metrics including tensor shape measures such as linear and planar anisotropy coefficients (CL and CP) can help differentiate glioblastomas from solitary brain metastases. Sixty-three patients with histopathologic diagnosis of glioblastomas (22 men, 16 women, mean age 58.4 years) and brain metastases (13 men, 12 women, mean age 56.3 years) were included in this study. Contrast-enhanced T1-weighted, fluid-attenuated inversion recovery (FLAIR) images, fractional anisotropy (FA), apparent diffusion coefficient (ADC), CL and CP maps were co-registered and each lesion was semi-automatically subdivided into four regions: central, enhancing, immediate peritumoral and distant peritumoral. DTI metrics as well as the normalized signal intensity from the contrast-enhanced T1-weighted images were measured from each region. Univariate and multivariate logistic regression analyses were employed to determine the best model for classification. The results demonstrated that FA, CL and CP from glioblastomas were significantly higher than those of brain metastases from all segmented regions (p<0.05), and the differences from the enhancing regions were most significant (p<0.001). FA and CL from the enhancing region had the highest prediction accuracy when used alone with an area under the curve of 0.90. The best logistic regression model included three parameters (ADC, FA and CP) from the enhancing part, resulting in 92% sensitivity, 100% specificity and area under the curve of 0.98. We conclude that DTI metrics, used individually or combined, have a potential as a non-invasive measure to differentiate glioblastomas from metastases.
PMCID:2655208
PMID: 18951985
ISSN: 1053-8119
CID: 240152
Does diffusion-tensor MR imaging provide accurate tracing of specific white matter tracts that correspond to actual anatomic and functional units in the central nervous system? [Comment]
Kim, Sungheon; Melhem, Elias R
By using healthy common marmoset monkeys, Yamada et al traced the retinogeniculate pathways with ultra high-spatial-resolution manganese-enhanced magnetic resonance (MR) imaging and diffusion-tensor imaging at 7 T. Both methods were compared with morphologic findings described in published histopathologic studies. Both methods provided identical tracing of the optic nerve, optic chiasm, and optic tracts to the level of the lateral geniculate nucleus (LGN), faithfully reproducing the crossing of the nasal portion of the optic nerve at the level of the chiasm into the contralateral optic tract. This study strongly suggests that diffusion-tensor imaging, a noninvasive method that can be used in human research and clinical practice, has the potential to provide accurate tracing of specific white matter tracts that correspond to actual anatomic and functional units in the central nervous system.
PMID: 19011176
ISSN: 0033-8419
CID: 240142
Three-dimensional mapping of lingual myoarchitecture by diffusion tensor MRI
Kim, Sungheon; Barnett, Alan S; Pierpaoli, Carlo; Chi-Fishman, Gloria
This study was performed to assess the feasibility of investigating the complex lingual myoarchitecture through segmentation of muscles from diffusion tensor imaging (DTI) data. The primary eigenvectors were found to be adequate for delineating the superior and inferior longitudinalis, genioglossus, and hyoglossus. The tertiary eigenvector orientations effectively revealed the homogeneous and systematic change of muscle orientation in the tongue core. In the longitudinalis near the tongue tip, the secondary eigenvectors were oriented in the radial direction. Lingual muscles were segmented using two methods: modified directional correlation (DC) and tensor coherence (TC) methods. The DC method, based on one eigenvector, was found to be inadequate for lingual muscle segmentation, whereas the TC method, based on the tensor shape and orientation, was used successfully to segment most lingual muscles. The segmentation result was used to report the diffusion tensor properties of individual lingual muscles. Also found was a continuous change in skewness of the intrinsic tongue core from negative in the anterior region to positive in the posterior region. DTI and the proposed segmentation method provide an adequate means of imaging and visualizing the complex, compartmentalized musculature of the tongue. The potential for in vivo research and clinical applications is demonstrated.
PMID: 17952877
ISSN: 0952-3480
CID: 240182
Automatic correction of in-plane bulk motion artifacts in self-navigated radial MRI
Kim, Sungheon; Dougherty, Lawrence; Rosen, Mark A; Song, Hee Kwon; Poptani, Harish
Radial MRI is typically used for scans that are sensitive to unavoidable motion. While the translational motion artifact can be easily removed from the radial trajectory data by phase correction, correction of rotational motion still remains a challenge in radial MRI. We present a novel method to refocus the image corrupted by view-to-view motion in the view-interleaved radial MRI data. In this method, the error in rotational view angles was modeled as a polynomial function of the view order and the model parameters were estimated by minimizing the self-navigator image metrics such as image entropy, gradient entropy, normalized gradient squared and mean square difference. Translational motion correction was conducted by aligning the projection profiles. Simulation studies were conducted to demonstrate the robustness of both translational and rotational motion correction methods in different noise levels. The proposed method was successfully applied to correct for motion of healthy subjects. Substantial motion correction with relative error of less than 5% was achieved by using either first- or second-order model with the image metrics. This study demonstrates the potential of the method for motion-sensitive applications.
PMID: 18068927
ISSN: 0730-725x
CID: 240162
Diffusion tensor MRI in rat models of invasive and well-demarcated brain tumors
Kim, Sungheon; Pickup, Stephen; Hsu, Oliver; Poptani, Harish
Diffusion tensor imaging (DTI) and its metrics, such as mean diffusivity (MD) and fractional anisotropy (FA), have been used to detect the extent of brain tumors and understand tumor growth and its influence on the surrounding tissue. However, there are conflicting reports on how DTI metrics can be used for tumor diagnosis. The physiological interpretation of these metrics in terms of tumor growth is also not clear. The objective of this study was to investigate the DTI parameters in two rat brain tumor models (9L and F98) with different patterns of aggressiveness by longitudinal monitoring of tumor growth and comparing the DTI parameters of these two tumor models. In addition to the standard DTI metrics, MD and FA, we measured other metrics representing diffusion tensor shape, such as linear and planar anisotropy coefficients (CL and CP), and orientational coherence measured by lattice index (LI), to characterize the two tumor models. The 9L tumor had higher FA, CL, and LI than the F98 tumor. F98 had a larger difference in anisotropies between tumor and peritumor regions than 9L. From the eigenvalues, it was found that the increase in CL and trace of the 9L tumor was due to an increase in the primary eigenvalue, whereas the increase in CP in the peritumor region was due to an increase in both primary and secondary eigenvalues and a decrease in tertiary eigenvalue. Our results indicate that shape-oriented anisotropy measures, such as CL and CP, and orientational coherence measures, such as LI, can provide useful information in differentiating these two tumor models and also differentiating tumor from peritumoral regions.
PMID: 17530617
ISSN: 0952-3480
CID: 240192
Transcytolemmal water exchange in pharmacokinetic analysis of dynamic contrast-enhanced MRI data in squamous cell carcinoma of the head and neck
Kim, Sungheon; Quon, Harry; Loevner, Laurie A; Rosen, Mark A; Dougherty, Lawrence; Kilger, Alex M; Glickson, Jerry D; Poptani, Harish
PURPOSE: To investigate the effect of transcytolemmal water exchange on the dynamic contrast-enhanced (DCE) T(1)-weighted MRI of human squamous cell carcinomas of the head and neck (HNSCC). MATERIALS AND METHODS: Nine patients with HNSCC nodal metastasis underwent pretreatment DCE-MRI with a temporal resolution of 2.5 seconds and a spatial resolution of 1 mm x 1 mm x 5 mm at 1.5T. We used two pharmacokinetic models for data analysis: generalized kinetic model (GKM) without considering transcytolemmal water exchange and the shutter-speed model (SSM), based on a two-site exchange model for transcytolemmal water exchange. The results were compared in three subgroups of voxels in the tumor depending on the level of contrast enhancement. RESULTS: SSM was found to be a better fit for more than 75% of pixels of all subjects (P < 0.01) in terms of residual size and Bayesian information criterion (BIC). For all three subgroups based on the contrast enhancement, the median K trans values of SSM were 42% to 55% higher than those of GKM and the median upsilon e values of SSM were 116% to 176% larger than those of GKM. The median K trans and upsilon e of two models were found significantly different (P < 0.01). The median tau i measured by SSM were from 211 to 364 msec. CONCLUSION: The effect of transcytolemmal water exchange is an important factor that needs to be incorporated for adequate modeling of contrast enhancement dynamics measured by MRI of HNSCC.
PMID: 17968962
ISSN: 1053-1807
CID: 240172
Dependence on diffusion time of apparent diffusion tensor of ex vivo calf tongue and heart
Kim, Sungheon; Chi-Fishman, Gloria; Barnett, Alan S; Pierpaoli, Carlo
The time dependence of the apparent diffusion tensor of ex vivo calf heart and tongue was measured for diffusion times (tau(d)) between 32 and 810 ms. The results showed evidence of restricted diffusion in the muscle tissues of both organs. In regions where the myofibers are parallel, the largest eigenvalue (lambda(1)) of the diffusion tensor remained the same for all diffusion times measured, while the other eigenvalues (lambda(2), lambda(3)) decreased by 29-36% between tau(d) = 32 ms and tau(d) = 400 ms. In regions where the fibers cross, the lambda(1) also changed, decreasing by 17% between tau(d) = 32 ms and tau(d) = 400 ms. The restricting compartment size and volume fraction were effectively estimated by fitting the time courses of the eigenvalues to a model consisting of a nonrestricted compartment and a cylindrically restricted compartment. To our knowledge, this study is the first demonstrating diffusion time dependence of measured water diffusion tensor in muscular tissue. With improvement in scanning technology, future studies may permit noninvasive, in vivo detection of changes in muscle myoarchitecture due to disease, treatment, and exercise.
PMID: 16265644
ISSN: 0740-3194
CID: 240202
Correlation between BOLD-fMRI and EEG signal changes in response to visual stimulus frequency in humans
Singh, Manbir; Kim, Sungheon; Kim, Tae-Seong
The correlation between signals acquired using electroencephalography (EEG) and fMRI was investigated in humans during visual stimulation. Evoked potential EEG and BOLD fMRI data were acquired independently under similar conditions from eight subjects during stimulation by a checkerboard flashed at frequencies ranging from 2-12 Hz. The results indicate highly correlated changes in the strength of the EEG signal averaged over two occipital electrodes and the BOLD signal within the occipital lobe as a function of flash frequency for 7/8 subjects (average linear correlation coefficient of 0.76). Both signals peaked at approximately 8 Hz. For one subject the correlation coefficient was 0.20; the EEG signal peaked at 6 Hz and the BOLD signal peaked at 10 Hz. Overall, the EEG and BOLD signals, each averaged over 40-sec stimulation periods, appear to be coupled linearly during visual stimulation by a flashing checkerboard.
PMID: 12509825
ISSN: 0740-3194
CID: 240212