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A deep learning model to dynamically predict cancer-associated thromboembolism in large-scale healthcare systems

He, Tianshe; Zheng, Chunlei; La, Jennifer; Pham, Dang; Jafari, Omid; Strampe, Jamie; Dulberger, Karlynn; Ramos-Cejudo, Jaime; Gaziano, J Michael; Do, Nhan V; Chitalia, Vipul; Ravid, Katya; Li, Ang; Fillmore, Nathanael R
Venous thromboembolism (VTE) is a leading cause of preventable death among patients undergoing systemic treatment for cancer. Studies suggest that treatment strategies such as direct oral anticoagulant administration can significantly reduce the likelihood of VTE. Therefore, identifying people at high risk is of critical importance. Leveraging electronic health records (EHRs) from the U.S. Veterans Affairs (VA) healthcare system, we developed a transformer model to predict VTE risk in 80,808 cancer patients following the initiation of systemic treatment. The model uses longitudinal diagnostic codes, laboratory values, and demographic data. The proposed transformer model dynamically predicts VTE risk in 3-month quarterly intervals over the year following systemic treatment, achieving progressively improved performance across quarters (AUC: 0.68-0.77). The model is similarly performant on the external validation cohort from the Harris Health System (HHS) with 9752 patients (AUC: 0.68-0.74). By improving its predictions as a patient's history evolves, this dynamic model surpasses prior static risk scores and better supports actionable decisions deeper into the treatment course.
PMID: 42151458
ISSN: 2398-6352
CID: 6037812

Neutrophil inflammation metrics are associated with the risk of future dementia in large data from NYU Langone Hospitals and the Veterans Health Administration

He, Tianshe; Betensky, Rebecca A; Osorio, Ricardo S; Swinnerton, Kaitlin; Zheng, Chunlei; Jacobs, Tovia; Vedvyas, Alok; Marsh, Karyn; Chodosh, Joshua; Hwang, Ula Y; Sifnugel, Natalia; Bubu, Omonigho M; Wisniewski, Thomas; Brophy, Mary; Do, Nhan V; Fillmore, Nathanael R; Ramos-Cejudo, Jaime
INTRODUCTION/BACKGROUND:Neutrophil-to-lymphocyte ratio (NLR), a marker of systemic inflammation, has been linked to dementia risk, but prior studies were limited by small sample sizes. METHODS:We assessed the association between baseline NLR and incident Alzheimer's disease (AD) and Alzeimer's disease and related dementias (AD/ADRD) using electronic health records from New York University (NYU) (n = 284,530) and the Veterans Health Administration [VA] (n = 85,836) Hospitals from 2011 to 2023. AD/ADRD diagnoses were identified via International Classification of Diseases (ICD) codes ≥6 months post-baseline. Cox models and cumulative incidence functions (CIFs) adjusted for demographic and clinical variables, with death as a competing risk. RESULTS:Higher NLR was associated significantly with increased AD/ADRD risk in both cohorts (NYU hazard ratio [HR] = 1.07, 95% confidence interval [CI] 1.02-1.15; VA HR = 1.21, 95% CI 1.10-1.34). Spline analysis further confirmed a continuous dose-response relationship, and subgroup analyses showed higher risk among female and Hispanic patients. DISCUSSION/CONCLUSIONS:Elevated NLR is independently associated with higher AD/ADRD risk across diverse populations, highlighting the role of systemic inflammation and neutrophil-mediated pathways in neurodegeneration.
PMID: 41930609
ISSN: 1552-5279
CID: 6021812

White matter microstructure differences in obstructive sleep apnea severity groups assessed by diffusion tensor metrics and biophysical modeling

Figueredo, Luisa F; Chen, Jenny; Gaggi, Naomi L; Song, Xiaotong; Jacobs, Tovia; Silva-Albornoz, Gabriela; Pehel, Shayna; Gonzalez, Moses; Badia, Sandra Giménez; Rosenzweig, Ivana; Naismith, Sharon L; Ramos-Cejudo, Jaime; Gills, Joshua; Ayappa, Indu; Rapoport, David M; Kam, Korey; Mullins, Anna E; Parekh, Ankit; Varga, Andrew W; Bubu, Omonigho M; Blessing, Esther; Novikov, Dmitry S; Fieremans, Els; Osorio, Ricardo S
PMID: 41781414
ISSN: 2045-2322
CID: 6008942

Obstructive sleep apnea severity, Alzheimer's disease plasma markers, and CSF brain amyloidosis and tau pathology

Bubu, Omonigho Michael; Mullins, Anna E; Shah, Shreshtha; Gills, Joshua L; Kam, Korey; Parekh, Ankit; Umasabor-Bubu, Ogie Q; Turner, Arlener D; Bernard, Mark; Briggs, Anthony; Ramos-Cejudo, Jaime; Valkanova, Elena; Mbah, Alfred K; Pahari, Purbanka; Debure, Ludovic; Ghuman, Mobeena; Boutajangout, Allal; Williams, Natasha J; Hwang, Jeongyeon; Williams, Masrai K; Rapoport, David M; Ayappa, Indu; de Léon, Mony; Jean-Louis, Girardin; Varga, Andrew W; Osorio, Ricardo S
INTRODUCTION/BACKGROUND:We examined obstructive sleep apnea (OSA) severity's association with Alzheimer's disease (AD) plasma biomarkers, independent or synergistic with cerebrospinal fluid (CSF) amyloid, and as a proof of concept, whether plasma amyloid beta (Aβ)42/Aβ40 with OSA severity improves detection of amyloidosis and tau pathology. METHODS:In 120 cognitively normal older adults (70 with CSF data) from New York University sleep and aging studies (2013-2021), OSA severity was measured using apnea/hypopnea index with 4% desaturation; plasma Aβ40, Aβ42, tau, and neurofilament light chain (NfL) via single molecule array; CSF amyloid and tau via enzyme-linked immunosorbent assay. Associations evaluated adjusted correlations and generalized models; receiver operating characteristic analyses evaluated diagnostic accuracy. RESULTS:OSA severity correlated with plasma Aβ40 (r = 0.21), Aβ42 (r = 0.26), and Aβ42/Aβ40 (r = 0.20). Plasma tau and NfL associations depended on CSF-Aβ42. OSA severity with Aβ42/Aβ40 improved CSF amyloidosis (area under the curve [AUC] = 0.78) and tau pathology (AUC = 0.71) detection. DISCUSSION/CONCLUSIONS:OSA severity relates to elevated plasma Aβ and, with CSF amyloid, to tau/NfL. Combined plasma and OSA measures aid non-invasive AD associations' detection.
PMCID:12965374
PMID: 41790569
ISSN: 1552-5279
CID: 6009302

Association of Platelet Aggregation With Markers of Alzheimer Disease Pathology in Middle-Aged Participants of the Framingham Heart Study

Ramos-Cejudo, Jaime; Beiser, Alexa S; Lu, Sophia; Tanner, Jeremy A; Scott, Matthew R; He, Tianshe; Ghosh, Saptaparni; Johnson, Keith A; Salinas, Joel; Bubu, Omonigho M; Fieremans, Els; Convit, Antonio; Pomara, Nunzio; Wisniewski, Thomas; Berger, Jeffrey S; Osorio, Ricardo S; Decarli, Charles S; Johnson, Andrew D; Seshadri, Sudha
BACKGROUND AND OBJECTIVES/OBJECTIVE:Vascular dysfunction contributes to Alzheimer disease (AD) and related dementias (ADRDs), but the underlying mechanisms remain unclear. Previous studies link midlife hemostasis and platelet aggregation measures to late-life dementia risk. We aimed to determine whether platelet aggregation in midlife is associated with imaging markers of AD pathology. METHODS:F-flortaucipir) PET uptake in dementia-free, middle-aged adults from the Framingham Heart Study. Co-primary outcomes included amyloid and tau uptake in AD-vulnerable regions. We also examined an MRI-based cortical thickness signature of AD risk as a secondary outcome. We used multivariable regression models adjusted for demographic and clinical factors, considering potential nonlinear associations. RESULTS:< 0.035), consistent with a neurodegenerative pattern. DISCUSSION/CONCLUSIONS:Our findings indicate that platelet aggregation is linked to PET and MRI markers of AD pathology as early as midlife. These findings support further investigation of platelet-mediated mechanisms in AD pathogenesis.
PMID: 41187307
ISSN: 1526-632x
CID: 5959732

Body mass index and blood volume influence plasma biomarkers and positron emission tomography classification in preclinical Alzheimer's disease

Jacobs, Tovia; Brien, Courtney O'; Figueredo, Luisa; Gogola, Alexandra; Gaggi, Naomi L; Hurwitz, Brian; Pirraglia, Elizabeth; Herzog, Shimon; Ramos-Cejudo, Jaime; Shepherd, Timothy M; Palta, Priya; Fortea, Juan; Wisniewski, Thomas M; Betensky, Rebecca A; Lopresti, Brian; Mielke, Michelle M; Convit, Antonio; Osorio, Ricardo S; ,
INTRODUCTION/BACKGROUND:Blood-based biomarkers (BBMs) are promising tools for Alzheimer's disease (AD) diagnosis, but their accuracy may be affected by body mass index (BMI) and blood volume (BV) through dilution. We investigated how BMI and BV influence BBM concentrations and PET prediction. METHODS:, glial fibrillary acidic protein [GFAP], neurofilament light chain [NfL]) and BBM-based PET predictions. RESULTS:and NfL, independent of brain amyloid burden. BMI-stratified thresholds improved amyloid PET prediction, with higher BBM thresholds and area under the curve (AUC) values seen in normal weight compared to overweight or obese participants. Drastic BMI/BV declines due to weight loss increased BBM variability and systematic PET misclassification. DISCUSSION/CONCLUSIONS:Adjusting for BMI/BV in BBM-based diagnostics appears to improve accuracy and reliable detection of AD pathology, especially in preclinical stages. HIGHLIGHTS/CONCLUSIONS:Body mass index (BMI) and blood volume (BV) significantly influenced plasma BBM concentrations in cognitively unimpaired (CU) individuals. Blood-based biomarkers (BBMs) associated more strongly with BV than with BMI. Dilution effects were independent of brain amyloid burden. BMI-stratified BBM thresholds improved amyloid positron emission tomography (PET) classification accuracy. Declines in BMI/BV resulted in PET prediction bias and systematic errors.
PMCID:12514939
PMID: 41074913
ISSN: 1552-5279
CID: 5952532

Carbonic anhydrase inhibitors prevent presymptomatic capillary flow disturbances in a model of cerebral amyloidosis

Gutiérrez-Jiménez, Eugenio; Rasmussen, Peter Mondrup; Mikkelsen, Irene Klærke; Kura, Sreekanth; Fruekilde, Signe K; Hansen, Brian; Bordoni, Luca; Carlsen, Jasper; Palmfeldt, Johan; Boas, David A; Sakadžić, Sava; Vinogradov, Sergei; Khatib, Mirna El; Ramos-Cejudo, Jaime; Wied, Boris; Leduc-Galindo, Desiree; Canepa, Elisa; Mar, Adam C; Gamallo-Lana, Begona; Fossati, Silvia; Østergaard, Leif
INTRODUCTION/BACKGROUND:Disturbances in microvascular flow dynamics are hypothesized to precede the symptomatic phase of Alzheimer's disease (AD). However, evidence in presymptomatic AD remains elusive, underscoring the need for therapies targeting these early vascular changes. METHODS:We employed a multimodal approach, combining in vivo optical imaging, molecular techniques, and ex vivo magnetic resonance imaging, to investigate early capillary dysfunction in C57BL/6-Tg(Thy1-APPSwDutIowa)BWevn/Mmjax (Tg-SwDI) mice without memory impairment. We also assessed the efficacy of carbonic anhydrase inhibitors (CAIs) in preventing capillary flow disturbances. RESULTS:Our study revealed capillary flow disturbances associated with alterations in capillary morphology, adhesion molecule expression, and amyloid beta (Aβ) load in 9- to 10-month-old Tg-SwDI mice without memory impairment. CAI treatment ameliorated these capillary flow disturbances, enhanced oxygen availability, and reduced Aβ load. DISCUSSION/CONCLUSIONS:These findings underscore the importance of capillary flow disturbances as early biomarkers in presymptomatic AD and highlight the potential of CAIs for preserving vascular integrity in the early stages of AD. HIGHLIGHTS/CONCLUSIONS:Uncovered early capillary dysfunction in a presymptomatic Alzheimer's disease (AD) mouse model. Evidence linking capillary stalls and capillary dysfunction with oxygen delivery issues in AD. Novel use of carbonic anhydrase inhibitors to prevent early capillary flow disturbances in AD.
PMCID:11936728
PMID: 40133235
ISSN: 1552-5279
CID: 5815312

The neutrophil to lymphocyte ratio associates with markers of Alzheimer's disease pathology in cognitively unimpaired elderly people

Jacobs, Tovia; Jacobson, Sean R; Fortea, Juan; Berger, Jeffrey S; Vedvyas, Alok; Marsh, Karyn; He, Tianshe; Gutierrez-Jimenez, Eugenio; Fillmore, Nathanael R; Bubu, Omonigho M; Gonzalez, Moses; Figueredo, Luisa; Gaggi, Naomi L; Plaska, Chelsea Reichert; Pomara, Nunzio; Blessing, Esther; Betensky, Rebecca; Rusinek, Henry; Zetterberg, Henrik; Blennow, Kaj; Glodzik, Lidia; Wisniewski, Thomas M; Leon, Mony J; Osorio, Ricardo S; Ramos-Cejudo, Jaime
BACKGROUND/UNASSIGNED:(p-tau), as well as the trajectories of these CSF measures obtained longitudinally. RESULTS/UNASSIGNED:A total of 111 ADNI and 190 NYU participants classified as CU with available NLR, CSF, and covariate data were included. Compared to NYU, ADNI participants were older (73.79 vs. 61.53, p < 0.001), had a higher proportion of males (49.5% vs. 36.8%, p = 0.042), higher BMIs (27.94 vs. 25.79, p < 0.001), higher prevalence of hypertensive history (47.7% vs. 16.3%, p < 0.001), and a greater percentage of Aβ-positivity (34.2% vs. 20.0%, p = 0.009). In the ADNI cohort, we found cross-sectional associations between the NLR and CSF Aβ42 (β=-12.193, p = 0.021), but not t-tau or p-tau. In the NYU cohort, we found cross-sectional associations between the NLR and CSF t-tau (β = 26.812, p = 0.019) and p-tau (β = 3.441, p = 0.015), but not Aβ42. In the NYU cohort alone, subjects classified as Aβ+ (n = 38) displayed a stronger association between the NLR and t-tau (β = 100.476, p = 0.037) compared to Aβ- subjects or the non-stratified cohort. In both cohorts, the same associations observed in the cross-sectional analyses were observed after incorporating longitudinal CSF data. CONCLUSIONS/UNASSIGNED:in the younger NYU cohort. Associations persisted after adjusting for comorbidities, suggesting a direct link between the NLR and AD. However, changes in associations between the NLR and specific AD biomarkers may occur as part of immunosenescence.
PMID: 38559231
ISSN: 2693-5015
CID: 5728992

The neutrophil to lymphocyte ratio associates with markers of Alzheimer's disease pathology in cognitively unimpaired elderly people

Jacobs, Tovia; Jacobson, Sean R; Fortea, Juan; Berger, Jeffrey S; Vedvyas, Alok; Marsh, Karyn; He, Tianshe; Gutierrez-Jimenez, Eugenio; Fillmore, Nathanael R; Gonzalez, Moses; Figueredo, Luisa; Gaggi, Naomi L; Plaska, Chelsea Reichert; Pomara, Nunzio; Blessing, Esther; Betensky, Rebecca; Rusinek, Henry; Zetterberg, Henrik; Blennow, Kaj; Glodzik, Lidia; Wisniweski, Thomas M; de Leon, Mony J; Osorio, Ricardo S; Ramos-Cejudo, Jaime; ,
BACKGROUND:(p-tau), as well as the trajectories of these CSF measures obtained longitudinally. RESULTS:A total of 111 ADNI and 190 NYU participants classified as CU with available NLR, CSF, and covariate data were included. Compared to NYU, ADNI participants were older (73.79 vs. 61.53, p < 0.001), had a higher proportion of males (49.5% vs. 36.8%, p = 0.042), higher BMIs (27.94 vs. 25.79, p < 0.001), higher prevalence of hypertensive history (47.7% vs. 16.3%, p < 0.001), and a greater percentage of Aβ-positivity (34.2% vs. 20.0%, p = 0.009). In the ADNI cohort, we found cross-sectional associations between the NLR and CSF Aβ42 (β = -12.193, p = 0.021), but not t-tau or p-tau. In the NYU cohort, we found cross-sectional associations between the NLR and CSF t-tau (β = 26.812, p = 0.019) and p-tau (β = 3.441, p = 0.015), but not Aβ42. In the NYU cohort alone, subjects classified as Aβ + (n = 38) displayed a stronger association between the NLR and t-tau (β = 100.476, p = 0.037) compared to Aβ- subjects or the non-stratified cohort. In both cohorts, the same associations observed in the cross-sectional analyses were observed after incorporating longitudinal CSF data. CONCLUSIONS:We report associations between the NLR and Aβ42 in the older ADNI cohort, and between the NLR and t-tau and p-tau in the younger NYU cohort. Associations persisted after adjusting for comorbidities, suggesting a direct link between the NLR and AD. However, changes in associations between the NLR and specific AD biomarkers may occur as part of immunosenescence.
PMID: 38760856
ISSN: 1742-4933
CID: 5733742

Obstructive Sleep Apnea, Platelet Aggregation, and Cardiovascular Risk

Kovbasyuk, Zanetta; Ramos-Cejudo, Jaime; Parekh, Ankit; Bubu, Omonigho M; Ayappa, Indu A; Varga, Andrew W; Chen, Ming-Huei; Johnson, Andrew D; Gutierrez-Jimenez, Eugenio; Rapoport, David M; Osorio, Ricardo S
BACKGROUND:Although related, the precise mechanisms linking obstructive sleep apnea (OSA) and cardiovascular disease (CVD) are unclear. Platelets are mediators of CVD risk and thrombosis and prior studies suggested associations of OSA and platelet activity. The aim of this study is to assess the link between OSA, platelet activity, and CVD-related risk factors. METHODS AND RESULTS/RESULTS:=0.002). No associations were detected in nonaspirin users (n=417). CONCLUSIONS:No associations were detected between OSA and platelet aggregation in a community sample. Our finding that OSA associates with increased platelet aggregation in the aspirin group, most of whom use it for primary prevention of CVD, suggests that platelet aggregation may mediate the adverse impact of OSA on vascular health in individuals with existing CVD risk, supporting further investigation.
PMID: 39056328
ISSN: 2047-9980
CID: 5696172