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Free-Breathing Hybrid Technique for Simultaneous Morphological and Quantitative Abdominal Imaging at 0.55 T

B Keerthivasan, Mahesh; Bruno, Mary; Solomon, Eddy; Brown, Ryan; Brantner, Douglas; Block, Kai Tobias; Chandarana, Hersh
OBJECTIVES/OBJECTIVE:Quantitative proton density fat fraction (PDFF) and R2* estimation at lower field strengths, such as 0.55 T, is challenging due to lower signal-to-noise ratio, reduced fat water chemical shift, and increased T2* relaxation times. In this study, we propose a 3D hybrid technique for abdominal imaging at 0.55 T that enables the simultaneous acquisition of T2-weighted and T1-weighted images and quantification of fat fraction and R2* parameters. MATERIALS AND METHODS/METHODS:Numerical simulations were performed to optimize a prototype radial hybrid turbo spin echo gradient echo (TSE-GRE) acquisition scheme for improved PDFF and R2* estimation accuracy. Phantom imaging experiments with and without motion were performed to evaluate the sensitivity of the estimation to external motion. Eleven volunteers were imaged on a prototype 0.55 T system. Data were acquired using the proposed technique under free-breathing conditions, and motion-compensated reconstruction was performed using the respiratory signal from a pilot-tone device. Image contrast and estimation performance were compared with conventional acquisition schemes in vitro and in vivo. RESULTS:Numerical simulations indicated R2* estimation accuracy was more sensitive to the choice of echo time compared with PDFF. Performing motion compensation reduced the mean error in R2* from 24 to 5 s-1 while the mean error in PDFF only reduced from 2.7% to 1.6%. The proposed technique generated T2-weighted images with comparable relative liver-spleen contrast as conventional imaging and there were no significant differences (P>0.05) in the PDFF and R2* values estimated from the hybrid technique compared with conventional multi-echo GRE. Further, the free-breathing acquisition allowed improved slice coverage while overcoming breath-hold limitations of conventional acquisition schemes. CONCLUSIONS:The use of a hybrid TSE-GRE acquisition technique can allow simultaneous morphological and quantitative PDFF and R2* estimation at 0.55 T under free-breathing conditions.
PMID: 40511639
ISSN: 1536-0210
CID: 5869742

Investigating Vocal Tract Configurations Across Different Belting Qualities in Female and Male Musical Theater Singers Using Real-Time Dynamic MRI

Rudisch, Denis Michael; Block, Kai Tobias; Edwards, Matt; Johnson, Aaron M
OBJECTIVES/HYPOTHESIS/OBJECTIVE:To identify vocal tract configuration patterns in vocally healthy contemporary commercial music (CCM) singers during the production of five industry-typical vocal qualities, including various belting qualities and traditional/legit musical theater singing. STUDY DESIGN/METHODS:Prospective, observational study. METHODS:Seven professional musical theater singers (four females, three males) performed arpeggiated patterns using five different vocal qualities: traditional/legit, neutral belt, brassy belt, warm belt, and rock belt. Real-time magnetic resonance imaging captured midsagittal vocal tract configurations. Eight morphological measures were analyzed: lip opening, jaw opening, jaw protrusion, tongue dorsum height, uvula elevation, oropharyngeal opening, laryngeal height, and laryngeal tilt. Linear mixed-effects modeling explored relationships between vocal qualities and anatomical measurements. RESULTS:Lip opening, jaw opening, oropharyngeal opening, and laryngeal height showed significant differences across vocal qualities. The traditional/legit voice quality demonstrated the smallest lip, jaw, and oropharyngeal openings with the lowest laryngeal position. Rock belt showed the largest lip and jaw openings. Brassy belt and rock belt featured larger oropharyngeal space and higher tongue positions than other qualities, creating a "tube-like" shape rather than the previously suggested megaphone shape. Laryngeal positioning was elevated in all belting styles, but not in traditional/legit. No significant differences were found between male and female participants. Lower pitch tasks were characterized by smaller lip, jaw, and oropharyngeal openings compared with higher pitch tasks. CONCLUSION/CONCLUSIONS:This pilot study revealed distinct vocal tract configurations for different vocal qualities, particularly between traditional/legit and belting styles. The findings challenge previous assumptions about megaphone-shaped vocal tracts in belting, demonstrating more complex configurations. These results provide a foundation for identifying typical versus atypical vocal tract adjustments in CCM singing, with implications for voice pedagogy and clinical practice.
PMID: 40382246
ISSN: 1873-4588
CID: 5852642

Prostate Cancer Risk Stratification and Scan Tailoring Using Deep Learning on Abbreviated Prostate MRI

Johnson, Patricia M; Dutt, Tarun; Ginocchio, Luke A; Saimbhi, Amanpreet Singh; Umapathy, Lavanya; Block, Kai Tobias; Sodickson, Daniel K; Chopra, Sumit; Tong, Angela; Chandarana, Hersh
BACKGROUND:MRI plays a critical role in prostate cancer (PCa) detection and management. Bi-parametric MRI (bpMRI) offers a faster, contrast-free alternative to multi-parametric MRI (mpMRI). Routine use of mpMRI for all patients may not be necessary, and a tailored imaging approach (bpMRI or mpMRI) based on individual risk might optimize resource utilization. PURPOSE/OBJECTIVE:To develop and evaluate a deep learning (DL) model for classifying clinically significant PCa (csPCa) using bpMRI and to assess its potential for optimizing MRI protocol selection by recommending the additional sequences of mpMRI only when beneficial. STUDY TYPE/METHODS:Retrospective and prospective. POPULATION/METHODS:The DL model was trained and validated on 26,129 prostate MRI studies. A retrospective cohort of 151 patients (mean age 65 ± 8) with ground-truth verification from biopsy, prostatectomy, or long-term follow-up, alongside a prospective cohort of 142 treatment-naïve patients (mean age 65 ± 9) undergoing bpMRI, was evaluated. FIELD STRENGTH/SEQUENCE/UNASSIGNED:3 T, Turbo-spin echo T2-weighted imaging (T2WI) and single shot EPI diffusion-weighted imaging (DWI). ASSESSMENT/RESULTS:The DL model, based on a 3D ResNet-50 architecture, classified csPCa using PI-RADS ≥ 3 and Gleason ≥ 7 as outcome measures. The model was evaluated on a prospective cohort labeled by consensus of three radiologists and a retrospective cohort with ground truth verification based on biopsy or long-term follow-up. Real-time inference was tested on an automated MRI workflow, providing classification results directly at the scanner. STATISTICAL TESTS/METHODS:AUROC with 95% confidence intervals (CI) was used to evaluate model performance. RESULTS:In the prospective cohort, the model achieved an AUC of 0.83 (95% CI: 0.77-0.89) for PI-RADS ≥ 3 classification, with 93% sensitivity and 54% specificity. In the retrospective cohort, the model achieved an AUC of 0.86 (95% CI: 0.80-0.91) for Gleason ≥ 7 classification, with 93% sensitivity and 62% specificity. Real-time implementation demonstrated a processing latency of 14-16 s for protocol recommendations. DATA CONCLUSION/CONCLUSIONS:The proposed DL model identifies csPCa using bpMRI and integrates it into clinical workflows. EVIDENCE LEVEL/METHODS:1. TECHNICAL EFFICACY/UNASSIGNED:Stage 2.
PMID: 40259798
ISSN: 1522-2586
CID: 5830062

T1 Relaxation-Enhanced Steady-State Acquisition With Radial k-Space Sampling: A Novel Family of Pulse Sequences for Motion-Robust Volumetric T1-Weighted MRI With Improved Lesion Conspicuity

Zi, Ruoxun; Edelman, Robert R; Maier, Christoph; Keerthivasan, Mahesh; Lattanzi, Riccardo; Sodickson, Daniel K; Block, Kai Tobias
OBJECTIVES/OBJECTIVE:Magnetization-prepared rapid gradient-echo (MP-RAGE) sequences are routinely acquired for brain exams, providing high conspicuity for enhancing lesions. Vessels, however, also appear bright, which can complicate the detection of small lesions. T1RESS (T1 relaxation-enhanced steady-state) sequences have been proposed as an alternative to MP-RAGE, offering improved lesion conspicuity and suppression of blood vessels. This work aims to evaluate the performance of radial T1RESS variants for motion-robust contrast-enhanced brain MRI. MATERIALS AND METHODS/METHODS:Radial stack-of-stars sampling was implemented for steady-state free-precession-based rapid T1RESS acquisition with saturation recovery preparation. Three variants were developed using a balanced steady-state free-precession readout (bT1RESS), an unbalanced fast imaging steady precession (FISP) readout (uT1RESS-FISP), and an unbalanced reversed FISP readout (uT1RESS-PSIF). Image contrast was evaluated in numerical simulations and phantom experiments. The motion robustness of radial T1RESS was demonstrated with a motion phantom. Four patients and six healthy volunteers were scanned at 3 T and 0.55 T. Extensions were developed combining T1RESS with GRASP for dynamic imaging, with GRAPPA for accelerated scans, and with Dixon for fat/water separation. RESULTS:In simulations and phantom scans, uT1RESS-FISP provided higher signal intensity for regions with lower T1 values (<500 ms) compared with MP-RAGE. In motion experiments, radial uT1RESS-FISP showed fewer artifacts than MP-RAGE and Cartesian uT1RESS-FISP. In patients, both unbalanced uT1RESS variants provided higher lesion conspicuity than MP-RAGE. Blood vessels appeared bright with MP-RAGE, gray with uT1RESS-FISP, and dark with uT1RESS-PSIF. At 0.55 T, bT1RESS provided high signal-to-noise ratio T1-weighted images without banding artifacts. Lastly, dynamic T1RESS images with a temporal resolution of 10.14 seconds/frame were generated using the GRASP algorithm. CONCLUSIONS:Radial T1RESS sequences offer improved lesion conspicuity and motion robustness and enable dynamic imaging for contrast-enhanced brain MRI. Both uT1RESS variants showed higher tumor-to-brain contrast than MP-RAGE and may find application as alternative techniques for imaging uncooperative patients with small brain lesions.
PMID: 40184541
ISSN: 1536-0210
CID: 5819432

MRI4ALL: A Week-Long Hackathon for the Development of an Open-Source Ultra-Low-Field MRI System

Block, Kai Tobias; Zhang, Chengtong; Ciancia, Vito; Cooley, Clarissa; Geethanath, Sairam; Stockmann, Jason; Verghese, George; Alon, Leeor
The goal of the MRI4ALL hackathon, which took place in October 2023, was to develop a functional low-field MRI scanner in just one week and to release all created source code and resources as open-source packages. The event was attended by 52 participants from 16 institutions who assembled the scanner on the last day of the hackathon. The scanner's magnetic B0 field with a strength of 43 mT and a target field-of-view size of 11 cm3 was created with a Halbach array made from 990 N40UH permanent magnets, held in place using 3D printed ring formers. Gradient coils were fabricated by gluing enameled copper wire onto 3D printed holders with imprinted wire patterns. A solenoid coil for RF transmission and reception was built by winding 20 turns of Litz wire around a 3D printed cylinder. A Red Pitaya FPGA prototyping board running the MaRCoS framework was used to control the scanner components, and a GPA-FHDO amplifier board was used to drive the gradients. To simplify the scanner's operation, console software with an intuitive graphical user interface was developed in Python using the PyPulseq package for sequence calculations. Furthermore, the scanner was equipped with a cooling system, as well as options for passive and active shimming. After resolving several technical issues that arose during the assembly, the scanner is now able to acquire MR images with different sequences. While not suitable for real-world clinical applications, it can be utilized for educational purposes or as a low-cost prototyping platform. Moreover, it may serve as a reference design for future MRI development projects. All source code and resources are available on the project website mri4all.org, allowing other groups to replicate the scanner. EVIDENCE LEVEL: n/a TECHNICAL EFFICACY: Stage 1.
PMID: 40129021
ISSN: 1522-2586
CID: 5814922

MRI of GlycoNOE in the human liver using GraspNOE-Dixon

Xu, Xiang; Leforestier, Rodolphe; Xia, Ding; Block, Kai Tobias; Feng, Li
PURPOSE/OBJECTIVE:The objective of this study was to develop a new MRI technique for non-invasive, free-breathing imaging of glycogen in the human liver using the nuclear Overhauser effect (NOE). METHODS:The proposed method, called GraspNOE-Dixon, uses a novel MRI sequence that combines steady-state saturation-transfer preparation with multi-echo golden-angle radial stack-of-stars sampling. Multi-echo acquisition enables fat/water-separated imaging for quantification of water-specific NOE. Image reconstruction is performed using the improved golden-angle radial sparse parallel imaging (GRASP-Pro) technique to exploit spatiotemporal correlations in dynamic images. To evaluate the proposed technique, imaging experiments were first performed on glycogen phantoms, followed by in vivo studies involving healthy volunteers and patients with fatty liver disease. In addition, a comparative assessment of signal changes before and after a 12-h fasting period was performed. RESULTS:Evaluation experiments on glycogen phantoms showed a robust linear correlation between the NOE signal and glycogen concentration. In vivo experiments demonstrated motion-robust NOE-weighted images, with potential for further acceleration. In subjects with varying liver fat content, the fat/water separation approach resulted in distortion-free Z-spectra, enabling the quantification of glycogen NOE. An approximately one-third reduction in the NOE signal was observed following a 12-h fasting period, consistent with a decrease in glycogen level. CONCLUSION/CONCLUSIONS:This study introduces a clinically feasible imaging technique, GraspNOE-Dixon, for free-breathing volumetric multi-echo imaging of hepatic glycogen at 3 T. The motion robust imaging technique developed here may also have applications in other body areas beyond liver imaging.
PMID: 39367632
ISSN: 1522-2594
CID: 5763392

Understanding Permeability Changes in Vestibular Schwannomas as Part of the Dynamic Response to Radiosurgery Using Golden-Angle Radial Sparse Parallel Imaging: A Retrospective Study

Meng, Ying; Lee, Matthew D; Berger, Assaf; Wiggins, Roy; O'Callaghan, James; Bernstein, Kenneth; Santhumayor, Brandon; Block, Kai Tobias; Fatterpekar, Girish; Kondziolka, Douglas
BACKGROUND AND OBJECTIVES/OBJECTIVE:Vestibular schwannomas demonstrate different responses after stereotactic radiosurgery (SRS), commonly including a transient loss of internal enhancement on postcontrast T1-weighted MRI thought to be due to an early reduction in tumor vascularity. We used dynamic contrast-enhanced based golden-angle radial sparse parallel (GRASP) MRI to characterize the vascular permeability changes underlying this phenomenon, with correlations to long-term tumor regression. METHODS:Consecutive patients with vestibular schwannoma who underwent SRS between 2017 and 2019, had a transient loss of enhancement after SRS, and had long-term longitudinal GRASP studies (6, 18, and 30 months) were included in this retrospective cohort analysis (n = 19). Using GRAVIS ( https://gravis-imaging.org/gravis/ ), an analysis pipeline for GRASP studies, we extracted the key parameters normalized to the venous sinus from a region of interest within the tumor. RESULTS:The peak, area under the curve (AUC), and wash-in phase slope were significantly reduced at 6, 18, and 30 months after SRS (corrected P < .05), even while the internal enhancement returned in the tumors. Larger pre-SRS tumors were more likely to have a greater reduction in peak ( P = .013) and AUC ( P = .029) at 6 months. In a subset of patients (N = 13) with long-term follow-up, the median percentage reduction in tumor volume was 58% at a median of 62 months. These patients showed a strong correlation between peak, AUC, and wash-in phase slope changes at 6 months and tumor volume at the last follow-up. CONCLUSION/CONCLUSIONS:After SRS and loss of internal contrast uptake within vestibular schwannomas, a slow vascular permeability dynamic persisted, suggesting the presence of postradiation processes such as fibrosis. We show for the first time, using GRASP, a quantitative assessment of the vascular radiobiological effect.
PMID: 39625281
ISSN: 1524-4040
CID: 5804392

DCE-MRI of the liver with sub-second temporal resolution using GRASP-Pro with navi-stack-of-stars sampling

Chen, Jingjia; Huang, Chenchan; Shanbhogue, Krishna; Xia, Ding; Bruno, Mary; Huang, Yuhui; Block, Kai Tobias; Chandarana, Hersh; Feng, Li
Respiratory motion-induced image blurring and artifacts can compromise image quality in dynamic contrast-enhanced MRI (DCE-MRI) of the liver. Despite remarkable advances in respiratory motion detection and compensation in past years, these techniques have not yet seen widespread clinical adoption. The accuracy of image-based motion detection can be especially compromised in the presence of contrast enhancement and/or in situations involving deep and/or irregular breathing patterns. This work proposes a framework that combines GRASP-Pro (Golden-angle RAdial Sparse Parallel MRI with imProved performance) MRI with a new radial sampling scheme called navi-stack-of-stars for free-breathing DCE-MRI of the liver without the need for explicit respiratory motion compensation. A prototype 3D golden-angle radial sequence with a navi-stack-of-stars sampling scheme that intermittently acquires a 2D navigator was implemented. Free-breathing DCE-MRI of the liver was conducted in 24 subjects at 3T including 17 volunteers and 7 patients. GRASP-Pro reconstruction was performed with a temporal resolution of 0.34-0.45 s per volume, whereas standard GRASP reconstruction was performed with a temporal resolution of 15 s per volume. Motion compensation was not performed in all image reconstruction tasks. Liver images in different contrast phases from both GRASP and GRASP-Pro reconstructions were visually scored by two experienced abdominal radiologists for comparison. The nonparametric paired two-tailed Wilcoxon signed-rank test was used to compare image quality scores, and the Cohen's kappa coefficient was calculated to evaluate the inter-reader agreement. GRASP-Pro MRI with sub-second temporal resolution consistently received significantly higher image quality scores (P < 0.05) than standard GRASP MRI throughout all contrast enhancement phases and across all assessment categories. There was a substantial inter-reader agreement for all assessment categories (ranging from 0.67 to 0.89). The proposed technique using GRASP-Pro reconstruction with navi-stack-of-stars sampling holds great promise for free-breathing DCE-MRI of the liver without respiratory motion compensation.
PMID: 39323100
ISSN: 1099-1492
CID: 5751912

High-resolution volumetric dynamic magnetic resonance imaging of the wrist using an 8-channel flexible receive coil

Zi, Ruoxun; Abbas, Batool; Wang, Bili; Walczyk, Jerzy; Brown, Ryan; Petchprapa, Catherine; Fishbaugh, James; Gerig, Guido; Block, Kai Tobias; Lattanzi, Riccardo
OBJECTIVE:Real-time imaging is useful for the evaluation of wrist instability. However, currently available real-time magnetic resonance imaging (MRI) methods are limited due to their 2D nature or provide insufficient temporal resolution and image quality for quantitative kinematic analysis. This work introduces a novel approach for volumetric dynamic MRI of the wrist joint during active motion and demonstrates the feasibility of tracking carpal bone motion. MATERIALS AND METHODS/METHODS:A flexible 8-element 3 T wrist receive coil and 3D-printed support platform for guiding motion were designed for dynamic wrist imaging. 2D real-time images were acquired using a fat-saturated FLASH sequence with radial sampling and reconstructed with the GRASP algorithm. Corresponding volumetric dynamic wrist images were obtained by assembling 2D real-time images into 3D snapshots using autodetected MRI-visible markers for slice alignment. The proposed method was demonstrated for radial-ulnar deviation on five healthy volunteers. RESULTS:The flexible wrist coil provided high SNR while allowing a wide range of wrist movements. 2D real-time wrist images were acquired with a temporal resolution of 48 ms/frame with negligible streaking artifacts. Carpal bones and metacarpal bones were properly aligned in the assembled dynamic volumes for all five subjects. The excellent bone-to-tissue contrast enabled accurate segmentation of the individual carpal bones on the assembled dynamic volumes. CONCLUSION/CONCLUSIONS:This work introduces a novel wrist coil and demonstrates that real-time volumetric dynamic examination of the moving wrist is feasible. The achieved image quality and high temporal resolution could enable automatic segmentation of carpal bones and quantitative kinematic assessment for evaluating wrist instability.
PMID: 39560769
ISSN: 1432-2161
CID: 5758362

Fat suppression using frequency-sweep RF saturation and iterative reconstruction

Zi, Ruoxun; Benkert, Thomas; Chandarana, Hersh; Lattanzi, Riccardo; Block, Kai Tobias
PURPOSE/OBJECTIVE:To introduce an alternative idea for fat suppression that is suited both for low-field applications where conventional fat-suppression approaches become ineffective due to narrow spectral separation and for applications with strong B0 homogeneities. METHODS:Separation of fat and water is achieved by sweeping the frequency of RF saturation pulses during continuous radial acquisition and calculating frequency-resolved images using regularized iterative reconstruction. Voxel-wise signal-response curves are extracted that reflect tissue's response to RF saturation at different frequencies and allow the classification into fat or water. This information is then utilized to generate water-only composite images. The principle is demonstrated in free-breathing abdominal and neck examinations using stack-of-stars 3D balanced SSFP (bSSFP) and gradient-recalled echo (GRE) sequences at 0.55 and 3T. Moreover, a potential extension toward quantitative fat/water separation is described. RESULTS:Experiments with a proton density fat fraction (PDFF) phantom validated the reliability of fat/water separation using signal-response curves. As demonstrated for abdominal imaging at 0.55T, the approach resulted in more uniform fat suppression without loss of water signal and in improved CSF-to-fat signal ratio. Moreover, the approach provided consistent fat suppression in 3T neck exams where conventional spectrally-selective fat saturation failed due to strong local B0 inhomogeneities. The feasibility of simultaneous fat/water quantification has been demonstrated in a PDFF phantom. CONCLUSION/CONCLUSIONS:The proposed principle achieves reliable fat suppression in low-field applications and adapts to high-field applications with strong B0 inhomogeneity. Moreover, the principle potentially provides a basis for developing an alternative approach for PDFF quantification.
PMID: 38888139
ISSN: 1522-2594
CID: 5671962