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Longitudinal Lower Airway Microbial Signatures of Acute Cellular Rejection in Lung Transplantation
Natalini, Jake G; Wong, Kendrew K; Nelson, Nathaniel C; Wu, Benjamin G; Rudym, Darya; Lesko, Melissa B; Qayum, Seema; Lewis, Tyler C; Wong, Adrian; Chang, Stephanie H; Chan, Justin C Y; Geraci, Travis C; Li, Yonghua; Wang, Chan; Li, Huilin; Pamar, Prerna; Schnier, Joseph; Mahoney, Ian J; Malik, Tahir; Darawshy, Fares; Sulaiman, Imran; Kugler, Matthias C; Singh, Rajbir; Collazo, Destiny E; Chang, Miao; Patel, Shrey; Kyeremateng, Yaa; McCormick, Colin; Barnett, Clea R; Tsay, Jun-Chieh J; Brosnahan, Shari B; Singh, Shivani; Pass, Harvey I; Angel, Luis F; Segal, Leopoldo N
PMID: 38358857
ISSN: 1535-4970
CID: 5633542
Lung Allograft Dysbiosis Associates with Immune Response and Primary Graft Dysfunction
Nelson, Nathaniel C; Wong, Kendrew K; Mahoney, Ian J; Malik, Tahir; Rudym, Darya; Lesko, Melissa B; Qayum, Seema; Lewis, Tyler C; Chang, Stephanie H; Chan, Justin C Y; Geraci, Travis C; Li, Yonghua; Pamar, Prerna; Schnier, Joseph; Singh, Rajbir; Collazo, Destiny; Chang, Miao; Kyeremateng, Yaa; McCormick, Colin; Borghi, Sara; Patel, Shrey; Darawshi, Fares; Barnett, Clea R; Sulaiman, Imran; Kugler, Matthias C; Brosnahan, Shari B; Singh, Shivani; Tsay, Jun-Chieh J; Wu, Benjamin G; Pass, Harvey I; Angel, Luis F; Segal, Leopoldo N; Natalini, Jake G
RATIONALE/BACKGROUND:Lower airway enrichment with oral commensals has been previously associated with grade 3 severe primary graft dysfunction (PGD) after lung transplantation (LT). We aimed to determine whether this dysbiotic signature is present across all PGD severity grades, including milder forms, and whether it is associated with a distinct host inflammatory endotype. METHODS:Lower airway samples from 96 LT recipients with varying degrees of PGD were used to evaluate the lung allograft microbiota via 16S rRNA gene sequencing. Bronchoalveolar lavage (BAL) cytokine concentrations and cell differential percentages were compared across PGD grades. In a subset of samples, we evaluated the lower airway host transcriptome using RNA sequencing methods. RESULTS:Differential analyses demonstrated lower airway enrichment with supraglottic-predominant taxa (SPT) in both moderate and severe PGD. Dirichlet Multinomial Mixtures (DMM) modeling identified two distinct microbial clusters. A greater percentage of subjects with moderate-severe PGD were identified within the dysbiotic cluster (C-SPT) than within the no PGD group (48 and 29%, respectively) though this difference did not reach statistical significance (p=0.06). PGD severity associated with increased BAL neutrophil concentration (p=0.03) and correlated with BAL concentrations of MCP-1/CCL2, IP-10/CXCL10, IL-10, and TNF-α (p<0.05). Furthermore, microbial signatures of dysbiosis correlated with neutrophils, MCP-1/CCL-2, IL-10, and TNF-α (p<0.05). C-SPT exhibited differential expression of TNF, SERPINE1 (PAI-1), MPO, and MMP1 genes and upregulation of MAPK pathways, suggesting that dysbiosis regulates host signaling to promote neutrophilic inflammation. CONCLUSIONS:Lower airway dysbiosis within the lung allograft is associated with a neutrophilic inflammatory endotype, an immune profile commonly recognized as the hallmark for PGD pathogenesis. This data highlights a putative role for lower airway microbial dysbiosis in the pathogenesis of this syndrome.
PMID: 39561864
ISSN: 1557-3117
CID: 5758452
The dynamic lung microbiome in health and disease
Natalini, Jake G; Singh, Shivani; Segal, Leopoldo N
New methods and technologies within the field of lung biology are beginning to shed new light into the microbial world of the respiratory tract. Long considered to be a sterile environment, it is now clear that the human lungs are frequently exposed to live microbes and their by-products. The nature of the lung microbiome is quite distinct from other microbial communities inhabiting our bodies such as those in the gut. Notably, the microbiome of the lung exhibits a low biomass and is dominated by dynamic fluxes of microbial immigration and clearance, resulting in a bacterial burden and microbiome composition that is fluid in nature rather than fixed. As our understanding of the microbial ecology of the lung improves, it is becoming increasingly apparent that certain disease states can disrupt the microbial-host interface and ultimately affect disease pathogenesis. In this Review, we provide an overview of lower airway microbial dynamics in health and disease and discuss future work that is required to uncover novel therapeutic targets to improve lung health.
PMCID:9668228
PMID: 36385637
ISSN: 1740-1534
CID: 5368872
2023 American College of Rheumatology (ACR)/American College of Chest Physicians (CHEST) Guideline for the Screening and Monitoring of Interstitial Lung Disease in People with Systemic Autoimmune Rheumatic Diseases
Johnson, Sindhu R; Bernstein, Elana J; Bolster, Marcy B; Chung, Jonathan H; Danoff, Sonye K; George, Michael D; Khanna, Dinesh; Guyatt, Gordon; Mirza, Reza D; Aggarwal, Rohit; Allen, Aberdeen; Assassi, Shervin; Buckley, Lenore; Chami, Hassan A; Corwin, Douglas S; Dellaripa, Paul F; Domsic, Robyn T; Doyle, Tracy J; Falardeau, Catherine Marie; Frech, Tracy M; Gibbons, Fiona K; Hinchcliff, Monique; Johnson, Cheilonda; Kanne, Jeffrey P; Kim, John S; Lim, Sian Yik; Matson, Scott; McMahan, Zsuzsanna H; Merck, Samantha J; Nesbitt, Kiana; Scholand, Mary Beth; Shapiro, Lee; Sharkey, Christine D; Summer, Ross; Varga, John; Warrier, Anil; Agarwal, Sandeep K; Antin-Ozerkis, Danielle; Bemiss, Bradford; Chowdhary, Vaidehi; Dematte D'Amico, Jane E; Hallowell, Robert; Hinze, Alicia M; Injean, Patil A; Jiwrajka, Nikhil; Joerns, Elena K; Lee, Joyce S; Makol, Ashima; McDermott, Gregory C; Natalini, Jake G; Oldham, Justin M; Saygin, Didem; Lakin, Kimberly Showalter; Singh, Namrata; Solomon, Joshua J; Sparks, Jeffrey A; Turgunbaev, Marat; Vaseer, Samera; Turner, Amy; Uhl, Stacey; Ivlev, Ilya
OBJECTIVE:We provide evidence-based recommendations regarding screening for interstitial lung disease (ILD) and the monitoring for ILD progression in people with systemic autoimmune rheumatic diseases (SARDs), specifically rheumatoid arthritis, systemic sclerosis, idiopathic inflammatory myopathies, mixed connective tissue disease, and Sjögren disease. METHODS:We developed clinically relevant population, intervention, comparator, and outcomes questions related to screening and monitoring for ILD in patients with SARDs. A systematic literature review was performed, and the available evidence was rated using the Grading of Recommendations, Assessment, Development, and Evaluation methodology. A Voting Panel of interdisciplinary clinician experts and patients achieved consensus on the direction and strength of each recommendation. RESULTS:Fifteen recommendations were developed. For screening people with these SARDs at risk for ILD, we conditionally recommend pulmonary function tests (PFTs) and high-resolution computed tomography of the chest (HRCT chest); conditionally recommend against screening with 6-minute walk test distance (6MWD), chest radiography, ambulatory desaturation testing, or bronchoscopy; and strongly recommend against screening with surgical lung biopsy. We conditionally recommend monitoring ILD with PFTs, HRCT chest, and ambulatory desaturation testing and conditionally recommend against monitoring with 6MWD, chest radiography, or bronchoscopy. We provide guidance on ILD risk factors and suggestions on frequency of testing to evaluate for the development of ILD in people with SARDs. CONCLUSION/CONCLUSIONS:This clinical practice guideline presents the first recommendations endorsed by the American College of Rheumatology and American College of Chest Physicians for the screening and monitoring of ILD in people with SARDs.
PMID: 38973729
ISSN: 2151-4658
CID: 5675002
2023 American College of Rheumatology (ACR)/American College of Chest Physicians (CHEST) Guideline for the Screening and Monitoring of Interstitial Lung Disease in People with Systemic Autoimmune Rheumatic Diseases
Johnson, Sindhu R; Bernstein, Elana J; Bolster, Marcy B; Chung, Jonathan H; Danoff, Sonye K; George, Michael D; Khanna, Dinesh; Guyatt, Gordon; Mirza, Reza D; Aggarwal, Rohit; Allen, Aberdeen; Assassi, Shervin; Buckley, Lenore; Chami, Hassan A; Corwin, Douglas S; Dellaripa, Paul F; Domsic, Robyn T; Doyle, Tracy J; Falardeau, Catherine Marie; Frech, Tracy M; Gibbons, Fiona K; Hinchcliff, Monique; Johnson, Cheilonda; Kanne, Jeffrey P; Kim, John S; Lim, Sian Yik; Matson, Scott; McMahan, Zsuzsanna H; Merck, Samantha J; Nesbitt, Kiana; Scholand, Mary Beth; Shapiro, Lee; Sharkey, Christine D; Summer, Ross; Varga, John; Warrier, Anil; Agarwal, Sandeep K; Antin-Ozerkis, Danielle; Bemiss, Bradford; Chowdhary, Vaidehi; Dematte D'Amico, Jane E; Hallowell, Robert; Hinze, Alicia M; Injean, Patil A; Jiwrajka, Nikhil; Joerns, Elena K; Lee, Joyce S; Makol, Ashima; McDermott, Gregory C; Natalini, Jake G; Oldham, Justin M; Saygin, Didem; Lakin, Kimberly Showalter; Singh, Namrata; Solomon, Joshua J; Sparks, Jeffrey A; Turgunbaev, Marat; Vaseer, Samera; Turner, Amy; Uhl, Stacey; Ivlev, Ilya
OBJECTIVE:We provide evidence-based recommendations regarding screening for interstitial lung disease (ILD) and the monitoring for ILD progression in people with systemic autoimmune rheumatic diseases (SARDs), specifically rheumatoid arthritis, systemic sclerosis, idiopathic inflammatory myopathies, mixed connective tissue disease, and Sjögren disease. METHODS:We developed clinically relevant population, intervention, comparator, and outcomes questions related to screening and monitoring for ILD in patients with SARDs. A systematic literature review was performed, and the available evidence was rated using the Grading of Recommendations, Assessment, Development, and Evaluation methodology. A Voting Panel of interdisciplinary clinician experts and patients achieved consensus on the direction and strength of each recommendation. RESULTS:Fifteen recommendations were developed. For screening people with these SARDs at risk for ILD, we conditionally recommend pulmonary function tests (PFTs) and high-resolution computed tomography of the chest (HRCT chest); conditionally recommend against screening with 6-minute walk test distance (6MWD), chest radiography, ambulatory desaturation testing, or bronchoscopy; and strongly recommend against screening with surgical lung biopsy. We conditionally recommend monitoring ILD with PFTs, HRCT chest, and ambulatory desaturation testing and conditionally recommend against monitoring with 6MWD, chest radiography, or bronchoscopy. We provide guidance on ILD risk factors and suggestions on frequency of testing to evaluate for the development of ILD in people with SARDs. CONCLUSION/CONCLUSIONS:This clinical practice guideline presents the first recommendations endorsed by the American College of Rheumatology and American College of Chest Physicians for the screening and monitoring of ILD in people with SARDs.
PMID: 38973714
ISSN: 2326-5205
CID: 5674992
2023 American College of Rheumatology (ACR)/American College of Chest Physicians (CHEST) Guideline for the Treatment of Interstitial Lung Disease in People with Systemic Autoimmune Rheumatic Diseases
Johnson, Sindhu R; Bernstein, Elana J; Bolster, Marcy B; Chung, Jonathan H; Danoff, Sonye K; George, Michael D; Khanna, Dinesh; Guyatt, Gordon; Mirza, Reza D; Aggarwal, Rohit; Allen, Aberdeen; Assassi, Shervin; Buckley, Lenore; Chami, Hassan A; Corwin, Douglas S; Dellaripa, Paul F; Domsic, Robyn T; Doyle, Tracy J; Falardeau, Catherine Marie; Frech, Tracy M; Gibbons, Fiona K; Hinchcliff, Monique; Johnson, Cheilonda; Kanne, Jeffrey P; Kim, John S; Lim, Sian Yik; Matson, Scott; McMahan, Zsuzsanna H; Merck, Samantha J; Nesbitt, Kiana; Scholand, Mary Beth; Shapiro, Lee; Sharkey, Christine D; Summer, Ross; Varga, John; Warrier, Anil; Agarwal, Sandeep K; Antin-Ozerkis, Danielle; Bemiss, Bradford; Chowdhary, Vaidehi; Dematte D'Amico, Jane E; Hallowell, Robert; Hinze, Alicia M; Injean, Patil A; Jiwrajka, Nikhil; Joerns, Elena K; Lee, Joyce S; Makol, Ashima; McDermott, Gregory C; Natalini, Jake G; Oldham, Justin M; Saygin, Didem; Lakin, Kimberly Showalter; Singh, Namrata; Solomon, Joshua J; Sparks, Jeffrey A; Turgunbaev, Marat; Vaseer, Samera; Turner, Amy; Uhl, Stacey; Ivlev, Ilya
OBJECTIVE:We provide evidence-based recommendations regarding the treatment of interstitial lung disease (ILD) in adults with systemic autoimmune rheumatic diseases (SARDs). METHODS:We developed clinically relevant population, intervention, comparator, and outcomes questions. A systematic literature review was then performed, and the available evidence was rated using the Grading of Recommendations, Assessment, Development, and Evaluation methodology. A panel of clinicians and patients reached consensus on the direction and strength of the recommendations. RESULTS:Thirty-five recommendations were generated (including two strong recommendations) for first-line SARD-ILD treatment, treatment of SARD-ILD progression despite first-line ILD therapy, and treatment of rapidly progressive ILD. The strong recommendations were against using glucocorticoids in systemic sclerosis-ILD as a first-line ILD therapy and after ILD progression. Otherwise, glucocorticoids are conditionally recommended for first-line ILD treatment in all other SARDs. CONCLUSION/CONCLUSIONS:This clinical practice guideline presents the first recommendations endorsed by the American College of Rheumatology and American College of Chest Physicians for the treatment of ILD in people with SARDs.
PMID: 38973731
ISSN: 2151-4658
CID: 5675012
2023 American College of Rheumatology (ACR)/American College of Chest Physicians (CHEST) Guideline for the Treatment of Interstitial Lung Disease in People with Systemic Autoimmune Rheumatic Diseases
Johnson, Sindhu R; Bernstein, Elana J; Bolster, Marcy B; Chung, Jonathan H; Danoff, Sonye K; George, Michael D; Khanna, Dinesh; Guyatt, Gordon; Mirza, Reza D; Aggarwal, Rohit; Allen, Aberdeen; Assassi, Shervin; Buckley, Lenore; Chami, Hassan A; Corwin, Douglas S; Dellaripa, Paul F; Domsic, Robyn T; Doyle, Tracy J; Falardeau, Catherine Marie; Frech, Tracy M; Gibbons, Fiona K; Hinchcliff, Monique; Johnson, Cheilonda; Kanne, Jeffrey P; Kim, John S; Lim, Sian Yik; Matson, Scott; McMahan, Zsuzsanna H; Merck, Samantha J; Nesbitt, Kiana; Scholand, Mary Beth; Shapiro, Lee; Sharkey, Christine D; Summer, Ross; Varga, John; Warrier, Anil; Agarwal, Sandeep K; Antin-Ozerkis, Danielle; Bemiss, Bradford; Chowdhary, Vaidehi; Dematte D'Amico, Jane E; Hallowell, Robert; Hinze, Alicia M; Injean, Patil A; Jiwrajka, Nikhil; Joerns, Elena K; Lee, Joyce S; Makol, Ashima; McDermott, Gregory C; Natalini, Jake G; Oldham, Justin M; Saygin, Didem; Lakin, Kimberly Showalter; Singh, Namrata; Solomon, Joshua J; Sparks, Jeffrey A; Turgunbaev, Marat; Vaseer, Samera; Turner, Amy; Uhl, Stacey; Ivlev, Ilya
OBJECTIVE:We provide evidence-based recommendations regarding the treatment of interstitial lung disease (ILD) in adults with systemic autoimmune rheumatic diseases (SARDs). METHODS:We developed clinically relevant population, intervention, comparator, and outcomes questions. A systematic literature review was then performed, and the available evidence was rated using the Grading of Recommendations, Assessment, Development, and Evaluation methodology. A panel of clinicians and patients reached consensus on the direction and strength of the recommendations. RESULTS:Thirty-five recommendations were generated (including two strong recommendations) for first-line SARD-ILD treatment, treatment of SARD-ILD progression despite first-line ILD therapy, and treatment of rapidly progressive ILD. The strong recommendations were against using glucocorticoids in systemic sclerosis-ILD as a first-line ILD therapy and after ILD progression. Otherwise, glucocorticoids are conditionally recommended for first-line ILD treatment in all other SARDs. CONCLUSION/CONCLUSIONS:This clinical practice guideline presents the first recommendations endorsed by the American College of Rheumatology and American College of Chest Physicians for the treatment of ILD in people with SARDs.
PMID: 38978310
ISSN: 2326-5205
CID: 5675022
Lower Airway Dysbiosis Augments Lung Inflammatory Injury in Mild-to-Moderate Chronic Obstructive Pulmonary Disease
Sulaiman, Imran; Wu, Benjamin G; Chung, Matthew; Isaacs, Bradley; Tsay, Jun-Chieh J; Holub, Meredith; Barnett, Clea R; Kwok, Benjamin; Kugler, Matthias C; Natalini, Jake G; Singh, Shivani; Li, Yonghua; Schluger, Rosemary; Carpenito, Joseph; Collazo, Destiny; Perez, Luisanny; Kyeremateng, Yaa; Chang, Miao; Campbell, Christina D; Hansbro, Philip M; Oppenheimer, Beno W; Berger, Kenneth I; Goldring, Roberta M; Koralov, Sergei B; Weiden, Michael D; Xiao, Rui; D'Armiento, Jeanine; Clemente, Jose C; Ghedin, Elodie; Segal, Leopoldo N
PMID: 37677136
ISSN: 1535-4970
CID: 5606572
Listing Dilemmas: Age, Frailty, Weight, Preexisting Cancers, and Systemic Diseases
Rudym, Darya; Natalini, Jake G; Trindade, Anil J
Selection of lung transplant candidates is an evolving field that pushes the boundaries of what is considered the norm. Given the continually changing demographics of the typical lung transplant recipient as well as the growing list of risk factors that predispose patients to poor posttransplant outcomes, we explore the dilemmas in lung transplant candidate selections pertaining to older age, frailty, low and high body mass index, preexisting cancers, and systemic autoimmune rheumatic diseases.
PMID: 36774166
ISSN: 1557-8216
CID: 5418002
Critical Care Management of the Lung Transplant Recipient
Natalini, Jake G; Clausen, Emily S
Lung transplantation is often the only treatment option for patients with severe irreversible lung disease. Improvements in donor and recipient selection, organ allocation, surgical techniques, and immunosuppression have all contributed to better survival outcomes after lung transplantation. Nonetheless, lung transplant recipients still experience frequent complications, often necessitating treatment in an intensive care setting. In addition, the use of extracorporeal life support as a means of bridging critically ill patients to lung transplantation has become more widespread. This review focuses on the critical care aspects of lung transplantation, both before and after surgery.
PMID: 36774158
ISSN: 1557-8216
CID: 5417992