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Deep-Learning Methods for Parallel Magnetic Resonance Imaging Reconstruction: A Survey of the Current Approaches, Trends, and Issues [Editorial]

Knoll, Florian; Hammernik, Kerstin; Zhang, Chi; Moeller, Steen; Pock, Thomas; Sodickson, Daniel K.; Akcakaya, Mehmet
ISI:000510210500016
ISSN: 1053-5888
CID: 4305312

The "Loopole" Antenna: A Hybrid Coil Combining Loop and Electric Dipole Properties for Ultra-High-Field MRI

Lakshmanan, Karthik; Cloos, Martijn; Brown, Ryan; Lattanzi, Riccardo; Sodickson, Daniel K; Wiggins, Graham C
Purpose/UNASSIGNED:To revisit the "loopole," an unusual coil topology whose unbalanced current distribution captures both loop and electric dipole properties, which can be advantageous in ultra-high-field MRI. Methods/UNASSIGNED:Loopole coils were built by deliberately breaking the capacitor symmetry of traditional loop coils. The corresponding current distribution, transmit efficiency, and signal-to-noise ratio (SNR) were evaluated in simulation and experiments in comparison to those of loops and electric dipoles at 7 T (297 MHz). Results/UNASSIGNED:, the loopole demonstrated significant performance boost in either the transmit efficiency or SNR at the center of a dielectric sample when compared to a traditional loop. Modest improvements were observed when compared to an electric dipole. Conclusion/UNASSIGNED:The loopole can achieve high performance by supporting both divergence-free and curl-free current patterns, which are both significant contributors to the ultimate intrinsic performance at ultra-high field. While electric dipoles exhibit similar hybrid properties, loopoles maintain the engineering advantages of loops, such as geometric decoupling and reduced resonance frequency dependence on sample loading.
PMCID:8207246
PMID: 34140840
ISSN: 1552-5031
CID: 4917682

Optimized quantification of spin relaxation times in the hybrid state

Assländer, Jakob; Lattanzi, Riccardo; Sodickson, Daniel K; Cloos, Martijn A
PURPOSE/OBJECTIVE:The optimization and analysis of spin ensemble trajectories in the hybrid state-a state in which the direction of the magnetization adiabatically follows the steady state while the magnitude remains in a transient state. METHODS: RESULTS: CONCLUSIONS:
PMID: 31189025
ISSN: 1522-2594
CID: 3930102

A New Method for Cartilage Evaluation in Femoroacetabular Impingement Using Quantitative T2 Magnetic Resonance Imaging: Preliminary Validation against Arthroscopic Findings

Ben-Eliezer, Noam; Raya, José G; Babb, James S; Youm, Thomas; Sodickson, Daniel K; Lattanzi, Riccardo
OBJECTIVE:The outcome of arthroscopic treatment for femoroacetabular impingement (FAI) depends on the preoperative status of the hip cartilage. Quantitative T2 can detect early biochemical cartilage changes, but its routine implementation is challenging. Furthermore, intrinsic T2 variability between patients makes it difficult to define a threshold to identify cartilage lesions. To address this, we propose a normalized T2-index as a new method to evaluate cartilage in FAI. DESIGN/METHODS:We retrospectively analyzed magnetic resonance imaging (MRI) data of 18 FAI patients with arthroscopically confirmed cartilage defects. Cartilage T2 maps were reconstructed from multi-spin-echo 3-T data using the echo-modulation-curve (EMC) model-based technique. The central femoral cartilage, assumed healthy in early-stage FAI, was used as the normalization reference to define a T2-index. We investigated the ability of the T2-index to detect surgically confirmed cartilage lesions. RESULTS:The average T2-index was 1.14 ± 0.1 and 1.13 ± 0.1 for 2 separated segmentations. Using T2-index >1 as the threshold for damaged cartilage, accuracy was 88% and 100% for the 2 segmentations. We found moderate intraobserver repeatability, although separate segmentations yielded comparable accuracy. Damaged cartilage could not be identified using nonnormalized average T2 values. CONCLUSIONS:This preliminary study confirms the importance of normalizing T2 values to account for interpatient variability and suggests that the T2-index is a promising biomarker for the detection of cartilage lesions in FAI. Future work is needed to confirm that combining T2-index with morphologic MRI and other quantitative biomarkers could improve cartilage assessment in FAI.
PMID: 31455091
ISSN: 1947-6043
CID: 4054412

Image reconstruction for interrupted-beam X-ray CT on diagnostic clinical scanners

Muckley, Matthew John; Chen, Baiyu; Vahle, Thomas; O'Donnell, Thomas; Knoll, Florian; Sodickson, Aaron; Sodickson, Daniel; Otazo, Ricardo
Low-dose X-ray CT is a major research area with high clinical impact. Compressed sensing using view-based sparse sampling and sparsity-promoting regularization has shown promise in simulations, but these methods can be difficult to implement on diagnostic clinical CT scanners since the X-ray beam cannot be switched on and off rapidly enough. An alternative to view-based sparse sampling is interrupted-beam sparse sampling. SparseCT is a recently-proposed interrupted-beam scheme that achieves sparse sampling by blocking a portion of the beam using a multislit collimator. The use of a multislit collimator necessitates a number of modifications to the standard compressed sensing reconstruction pipeline. In particular, we find that SparseCT reconstruction is feasible within a model-based image reconstruction framework that incorporates data fidelity weighting to consider penumbra effects and source jittering to consider the effect of partial source obstruction. Here, we present these modifications and demonstrate their application in simulations and real-world prototype scans. In simulations compared to conventional low-dose acquisitions, SparseCT is able to achieve smaller normalized root-mean square differences than tube-current reduction at larger dose reduction levels. In prototype experiments, we successfully apply our reconstruction modifications and maintain image resolution at the quarter-dose reduction level. The SparseCT design requires only small hardware modifications to current diagnostic clinical scanners, opening up new possibilities for CT dose reduction.
PMID: 31258151
ISSN: 1361-6560
CID: 3967802

Resonate: Reflections and recommendations on implicit biases within the ISMRM [Editorial]

Warnert, Esther A H; Nayak, Krishna; Menon, Ravi; Rice, Curt; Port, John; Morris, Elizabeth A; Sodickson, Daniel K; Sundgren, Pia; Miller, Karla L; Anazodo, Udunna C
PMID: 30666751
ISSN: 1522-2586
CID: 3610502

SparseCT: System Concept and Design of Multi-slit Collimators

Chen, Baiyu; Kobler, Erich; Muckley, Matthew J; Sodickson, Aaron D; O'Donnell, Thomas; Flohr, Thomas; Schmidt, Bernhard; Sodickson, Daniel K; Otazo, Ricardo
PURPOSE/OBJECTIVE:. SparseCT partially blocks the x-ray beam with a multi-slit collimator (MSC) to perform a multidimensional undersampling along the view and detector row dimensions. SparseCT undersamples the projection data within each view and moves the MSC along the z direction during gantry rotation to change the undersampling pattern. It enables reconstruction of images from undersampled data using compressed sensing algorithms. The purpose of this work is to design the spacing and width of the MSC slits and the MSC motion patterns based on beam separation, undersampling efficiency, and image quality. The development and testing of a SparseCT prototype with the designed MSC will be described in a following paper. METHODS:We chose a few initial MSC designs based on the guidance from two metrics: beam separation and undersampling efficiency. Both beam separation and undersampling efficiency were measured from numerically simulated photon distribution with MSC taken into consideration. Beam separation measures the separation between x-ray beams from consecutive slits, taking into account penumbra effects on both sides of each slit. Undersampling efficiency measures the dose-weighted similarity between penumbra undersampling and binary undersampling, in other words, the effective contribution of the incident dose to the SNR of the projection data. We then compared the initially chosen MSC designs in terms of their reconstruction image quality. SparseCT projections were simulated from fully-sampled patient projection data according to the MSC design and motion pattern, reconstructed iteratively using a sparsity-enforcing penalized weighted least squares cost function with ordered subsets/momentum algorithm, and compared visually and quantitatively. RESULTS:Simulated photon distributions indicate that the size of the penumbra is dominated by the size of the focal spot. Therefore, a wider MSC slit and a smaller focal spot lead to increased beam separation and undersampling efficiency. For 4-fold undersampling with a 1.2 mm focal spot, a minimum MSC slit width of 3 detector rows (projected to the detector surface) is needed for beam separation; for 3-fold undersampling, a minimum slit width of 4 detector rows is needed. Simulations of SparseCT projection and reconstruction indicate that the motion pattern of the MSC does not have a visible impact on image quality. An MSC slit width of 3 or 4 detector rows yields similar image quality. CONCLUSION/CONCLUSIONS:The MSC is the key component of the SparseCT method. Simulations of MSC designs incorporating x-ray beam penumbra effects showed that for 3-fold and 4-fold dose reductions, an MSC slit width of 4 detector rows provided reasonable beam separation, undersampling efficiency, and image quality.
PMID: 30980728
ISSN: 2473-4209
CID: 3809512

Value of MRI in medicine: More than just another test? [Editorial]

van Beek, Edwin J R; Kuhl, Christiane; Anzai, Yoshimi; Desmond, Patricia; Ehman, Richard L; Gong, Qiyong; Gold, Garry; Gulani, Vikas; Hall-Craggs, Margaret; Leiner, Tim; Lim, C C Tschoyoson; Pipe, James G; Reeder, Scott; Reinhold, Caroline; Smits, Marion; Sodickson, Daniel K; Tempany, Clare; Vargas, H Alberto; Wang, Meiyun
There is increasing scrutiny from healthcare organizations towards the utility and associated costs of imaging. MRI has traditionally been used as a high-end modality, and although shown extremely important for many types of clinical scenarios, it has been suggested as too expensive by some. This editorial will try and explain how value should be addressed and gives some insights and practical examples of how value of MRI can be increased. It requires a global effort to increase accessibility, value for money, and impact on patient management. We hope this editorial sheds some light and gives some indications of where the field may wish to address some of its research to proactively demonstrate the value of MRI. Level of Evidence: 5 Technical Efficacy: Stage 5 J. Magn. Reson. Imaging 2019;49:e14-e25.
PMID: 30145852
ISSN: 1522-2586
CID: 3990552

Effect of multislit collimator motion on sparsect image quality for low-dose CT examinations [Meeting Abstract]

Chen, B; Kobler, E; Allmendinger, T; Sodickson, A; Sodickson, D; Otazo, R
Purpose: SparseCT is a practical compressed sensing approach for CT dose reduction, which undersamples each view along the row dimension with a multislit collimator (MSC). The MSC is mounted between tube and patient and moves along the row direction to change the undersampling pattern along the row dimension for each view. This study aims to investigate the impact of MSC motion on SparseCT image quality.
Method(s): A SparseCT prototype was built with the MSC installed on a state-of-art clinical CT scanner. The MSC is a tungsten plate with periodic slits parallel to detector row direction. The slit separation is 3 times wider than the slit width, such that the dose reduction factor is 3. A liver phantom was scanned repeatedly at various MSC locations, each sampling different rows. The MSC was static during each scan, but 'dynamic MSC' scans were retrospectively simulated by stitching together projections from different scans. Six MSC motions were tested, including 3 patterns (linear, back-and-forth, and random) and 2 speeds (1 and 5 row(s)/projection). The dynamic MSC scans were reconstructed iteratively using a compressed sensing reconstruction algorithm that enforces 3D sparsity using total variation regularization. Image quality for different motions were compared in terms of PSNR and SSIM.
Result(s): Increasing MSC motion speed significantly improved PSNR and SSIM while the effect of motion pattern was negligible. Higher motion speeds also markedly reduced undersampling artifacts observed around high attenuation, high frequency objects such as the spine. The best PSNR and SSIM were achieved using a combination of linear motion and a speed of 5 rows/projection.
Conclusion(s): The motion of the MSC has a significant impact on the performance of SparseCT. Higher motion speed yields more incoherent undersampling artifacts and thus improves reconstruction quality
EMBASE:628827271
ISSN: 0094-2405
CID: 4044152

Population net benefit of prostate MRI with high spatiotemporal resolution contrast-enhanced imaging: A decision curve analysis

Prabhu, Vinay; Rosenkrantz, Andrew B; Otazo, Ricardo; Sodickson, Daniel K; Kang, Stella K
BACKGROUND:The value of dynamic contrast-enhanced (DCE) sequences in prostate MRI compared with noncontrast MRI is controversial. PURPOSE/OBJECTIVE:To evaluate the population net benefit of risk stratification using DCE-MRI for detection of high-grade prostate cancer (HGPCA), with or without high spatiotemporal resolution DCE imaging. STUDY TYPE/METHODS:Decision curve analysis. POPULATION/METHODS:Previously published patient studies on MRI for HGPCA detection, one using DCE with golden-angle radial sparse parallel (GRASP) images and the other using standard DCE-MRI. FIELD STRENGTH/SEQUENCE/UNASSIGNED:GRASP or standard DCE-MRI at 3 T. ASSESSMENT/RESULTS:Each study reported the proportion of lesions with HGPCA in each Prostate Imaging Reporting and Data System version 2 (PI-RADS v2) category (1-5), before and after reclassification of peripheral zone lesions from PI-RADS 3-4 based on contrast-enhanced images. This additional risk stratifying information was translated to population net benefit, when biopsy was hypothetically performed for: all lesions, no lesions, PI-RADS ≥3 (using NC-MRI), and PI-RADS ≥4 on DCE. STATISTICAL TESTS/UNASSIGNED:Decision curve analysis was performed for both GRASP and standard DCE-MRI data, translating the avoidance of unnecessary biopsies and detection of HGPCA to population net benefit. We standardized net benefit values for HGPCA prevalence and graphically summarized the comparative net benefit of biopsy strategies. RESULTS:For a clinically relevant range of risk thresholds for HGPCA (>11%), GRASP DCE-MRI with biopsy of PI-RADS ≥4 lesions provided the highest net benefit, while biopsy of PI-RADS ≥3 lesions provided highest net benefit at low personal risk thresholds (2-11%). In the same range of risk thresholds using standard DCE-MRI, the optimal strategy was biopsy for all lesions (0-15% risk threshold) or PI-RADS ≥3 on NC-MRI (16-33% risk threshold). DATA CONCLUSION/UNASSIGNED:GRASP DCE-MRI may potentially enable biopsy of PI-RADS ≥4 lesions, providing relatively preserved detection of HGPCA and avoidance of unnecessary biopsies compared with biopsy of all PI-RADS ≥3 lesions. J. Magn. Reson. Imaging 2019.
PMID: 30629317
ISSN: 1522-2586
CID: 3579942