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Heterogeneity in proteomic risk factors for coronary heart disease by sex and menopause status

Herold, Janina M; Surapaneni, Aditya; Coresh, Josef; Mavromatis, Lucas; Ruggles, Kelly V; Boerwinkle, Eric; Reynolds, Harmony; Ballantyne, Christie M; Yu, Bing; Flaherty, Carina; Grams, Morgan E
BACKGROUND/UNASSIGNED:Coronary heart disease (CHD) is the leading cause of morbidity and mortality worldwide, yet current prediction tools do not fully capture sex differences in risk. Menopause further modifies women's risk of CHD, but underlying molecular mechanisms are not well understood. Proteomic profiling may provide new insights into these mechanisms. METHODS/UNASSIGNED:We analyzed 4,877 SomaScan™-based plasma proteins in 10,034 Atherosclerosis Risk in Communities (ARIC) participants. Using linear regression, we identified sex- and menopause-related differences in circulating protein concentrations. We performed pathway enrichment analyses to capture underlying biological mechanisms. To evaluate the associations between proteins and incident CHD and differences by sex or menopause status, we applied Cox regression. Finally, we used LASSO regression to identify proteins that improve CHD risk prediction beyond an established clinical model. RESULTS/UNASSIGNED:We observed significant differences in circulating proteins by sex and menopausal status, including early changes during the menopausal transition. We found protein associations with incident CHD differed markedly by sex and menopausal stage: eight proteins were associated with CHD in men, compared with 54 in women, and six and 17 proteins in peri‑ and postmenopausal women, respectively. In risk prediction analyses, adding sex-specific protein panels improved CHD prediction (ΔC-statistic=0.05 in men and 0.03 in women), with similar improvement across menopausal stages. CONCLUSIONS/UNASSIGNED:Proteomic profiles underlying CHD risk differ substantially by sex and menopausal stage. These findings suggest potential biological heterogeneity in CHD and support the study of sex- and menopause-related differences in underlying mechanisms.
PMCID:13676126
PMID: 42893041
ISSN: 2666-6677
CID: 6074846

Impact of demographic factors on clinical outcomes of patients with acute myeloid leukemia

Duarte, Cassandra; Abbot, Diana; Bosma, Grace; Kent, Andrew; Schwartz, Marc; Collins, Cailin; Angelos, Mathew G; McMahon, Christine; Gutman, Jonathon; Pollyea, Daniel A; Amaya, Maria
PMCID:12951143
PMID: 40931864
ISSN: 1592-8721
CID: 6075179

CAR HEMATOTOX independently predicts outcomes after CD19 CAR-T therapy for acute lymphoblastic leukemia

Valtis, Yannis K; Lin, Chenyu; Nemirovsky, David; Devlin, Sean; Rejeski, Kai; Curran, Kevin J; Wang, Xiuyan; Shah, Nirali N; Jeyakumar, Nikeshan; Miller, Katharine; Zhang, Amy; Kota, Vamsi K; Al Darobi, Ali H; Muhsen, Ibrahim; Sasine, Joshua; Aldoss, Ibrahim; Advani, Anjali S; Reshef, Ran; Chen, Evan C; Kopmar, Noam; Tsai, Stephanie B; Hilal, Talal; Shah, Bijal D; Faramand, Rawan; Solh, Melhem M; Tan, Virginia; Bezerra, Evandro; Battiwalla, Minoo; Ramakrishnan, Aravind; Mathews, John; Shaughnessy, Paul; Mountjoy, Luke; Hoeg, Rasmus T; Dykes, Kaitlyn C; Logan, Aaron C; Kumaran, Muthu V; Schwartz, Marc; Tracy, Sean; Moore, Jozal; Odstrcil Bobillo, Silvina; Frey, Noelle V; Connor, Matthew; Ladha, Abdullah; Dholaria, Bhagirathbhai; Sutherland, Katherine; Roloff, Gregory W; Muffly, Lori S; Park, Jae H
Chimeric antigen receptor (CAR) T-cell (CAR-T) treatment for B-cell acute lymphoblastic leukemia (ALL) induces high initial response rates, but most patients relapse. Low disease burden (often defined as <5% blasts in the bone marrow) is associated with better outcomes. CAR HEMATOTOX (HT) is a score using prelymphodepletion hematologic and inflammatory parameters to predict outcomes in lymphoma. Here, we assess its prognostic utility in a large multicenter adult B-cell ALL cohort. Patients who received brexucabtagene autoleucel across 33 centers in North America were included as part of the Real-World Outcomes Collaborative of CAR-T in Adult ALL (ROCCA) consortium. An independent cohort of 61 patients with ALL treated with an investigational CD19 CAR-T therapy at 1 center was also described. Among 199 ROCCA consortium patients, 43 (22%) patients with HTlow scores had lower rates of delayed neutrophil recovery than those with HThigh scores (26% vs 52%, P = .002) and fewer severe infections (2.5% vs 18.8%, P = .011). They also had higher response rates, overall survival (OS), and event-free survival (EFS), as well as lower nonrelapse mortality and cumulative incidence of relapse. The survival differences remained significant after multivariable adjustment for disease burden and other covariates. In the investigational cohort of 61 patients, patients with HTlow scores had improved OS and EFS, as well as higher peak CAR-T expansion. In summary, CAR HT score is a prognostic factor independent of disease burden in adult ALL. HTlow score is associated with superior outcomes after CD19 CAR-Ts and higher CAR-T expansion in a single-center cohort. These trials were registered at www.clinicaltrials.gov as #NCT01044069 and #NCT01860937.
PMID: 41052404
ISSN: 2473-9537
CID: 6075180

Diagnosis and Management of Philadelphia-Like Acute Lymphoblastic Leukemia in Adults

Pourhassan, Hoda; Lee, Winston Y; Schwartz, Marc; Pullarkat, Vinod; Aldoss, Ibrahim
BACKGROUND:The entity of Philadelphia (Ph)-like acute lymphoblastic leukemia (ALL) accounts for approximately 20-30% of newly diagnosed adults with B-cell ALL cases in the USA. Compared to other B-cell subtypes, Ph-like ALL is associated with overall poor prognosis and inferior outcomes with high measurable residual disease rates following induction therapy, increased risk of treatment failure and relapse, as well as short event-free and overall survival. SUMMARY:Here we aim to highlight Ph-like ALL genetic subtypes and methods of genomic profiling for diagnosis and disease prognostication and to summarize current management approaches for frontline treatment including multiagent chemotherapy, immunotherapy, tyrosine kinase and small molecule inhibitors, and the role of allogeneic stem cell transplantation. KEY MESSAGES:Despite the improvement in the treatment outcomes of adult patients with newly diagnosed B-cell ALL, patients with Ph-like ALL continue to do poorly with standard therapy. Thus, tailored therapeutic studies are indeed warranted to refine frontline treatment approaches and to improve outcomes for patients with Ph-like ALL.
PMID: 41144606
ISSN: 1421-9662
CID: 6075182

Quantifying benefit and cost-effectiveness of additional investment in community health workers for people with cardiovascular risks in New York City

Frechette, Jillian M; Morse, Michelle; McNatt, Zahirah Z; Eyssallenne, Antonia P; Parrott, Jannae; Cabrera, Ramon; Zhou, Qinlian; Allen, Bennett; Braithwaite, R Scott
INTRODUCTION/BACKGROUND:To estimate the life expectancy gains, cost effectiveness, and impact on life expectancy inequality achieved by additional investment in community health worker (CHW) programs in New York City Methods: Using a state-transition model of mortality-driving conditions adapted to New York City anchored to 2021, we examined the impact of additional investment in CHWs for people with obesity, hypertension, and diabetes on (1) change in life expectancy, (2) health-inclusive (lifespan) return on investment (LROI), and (3) change in inequality of life expectancy distribution between neighborhoods. Inequality analyses included neighborhood-level baseline life expectancy, median income, and plurality race or ethnicity. Analyses were conducted in 2026. RESULTS:Scaling up CHWs results in a 0.13-year life expectancy gain on the citywide level, with favorable LROI of 14.72 years per $100,000 invested. Neighborhood-level gains range from 0.05 years to 0.33 years, while LROI ranges from 11.76 to 29.62 life-years/$100,000. In general, life expectancy gains and LROI were higher for lower-income, lower life expectancy, and minoritized race neighborhoods. CONCLUSIONS:Additional investment in CHW programs in New York City has the potential to cost-effectively raise the citywide life expectancy while reducing inequalities between neighborhoods.
PMID: 42971447
ISSN: 1873-2607
CID: 6074949

Beyond the Surface: AI-Assisted Basal Cell Carcinoma Detection via Optical Coherence Tomography

Patel, Aneri B; Sonuga Finney, Olamide; Golbari, Nicole M; Holmes, Jon; Kelly, Kristen M; Zachary, Christopher
OBJECTIVES/OBJECTIVE:To determine whether integrating an artificial intelligence (AI) decision-support system (VivoAID) into optical coherence tomography (OCT) interpretation improves diagnostic accuracy and efficiency for novice users evaluating basal cell carcinomas (BCCs). METHODS:Two dermatology research fellows completed a structured OCT training module for BCC identification using the VivoSight Dx system. Each independently reviewed 45 de-identified OCT scans (31 BCC-positive and 14 BCC-negative, negative ones included squamous cell carcinomas, keratoacanthomas, actinic keratoses and scar tissue), with ground truth established by expert clinical interpretation and histopathology, in two sessions: one unassisted and one AI-assisted. Session order was counterbalanced between learners, and scans were re-randomized for AI sessions. In unassisted sessions, learners manually classified scans; in AI-assisted sessions, they reviewed AI-annotated scans, recorded agreement/disagreement, and noted additional findings. Time-to-decision per scan was measured. A linear mixed-effects model in SAS assessed the effect of AI on decision time while accounting for scan difficulty. RESULTS:Without AI, correct BCC identification was 62% for Learner 1% and 64% for Learner 2 (combined 63%). With AI assistance, accuracy increased to 78% and 76%, respectively (combined 77%), reflecting relative improvements of 25% and 17% (combined +21%). Mean decision time decreased from 45 to 28 s for Learner 1 and from 35 to 22 s for Learner 2, yielding a combined reduction from 40 to 25 s (~38% faster). AI use significantly reduced decision time by an average of 15.1 s per image (p < 0.0001). AI standalone accuracy versus expert opinion was 64%, comparable to novice baseline performance. CONCLUSIONS:AI-enhanced OCT with VivoAID significantly improved novice users' diagnostic accuracy and efficiency, despite AI performance alone being similar to baseline novice interpretation. These data support VivoAID's role as a decision-support and potential educational tool in dermatology. Findings are limited by small sample size, single-institution design, and repeated review of the same scans. TRIAL REGISTRATION/BACKGROUND:None.
PMID: 42960626
ISSN: 1096-9101
CID: 6074806

Phase II study of lenvatinib plus pembrolizumab for patients with immunotherapy-naive advanced gastric cancer following first-line therapy

Lee, J W; Oberstein, P E; Goldberg, J D; Jia, M; Becker, D; Siolas, D; Beri, N; Ryan, T; Kozuch, P; Levinson, B; Leichman, L P; Cohen, D J
BACKGROUND/UNASSIGNED:Treatment options for refractory gastric cancer are limited. Preclinical data suggest interplay between angiogenesis and immune regulation, with vascular endothelial growth factor impairing antitumor immunity through decreasing antigen presentation, effector function, and immune cell trafficking. This phase II study evaluated lenvatinib plus pembrolizumab in the refractory setting. PATIENTS AND METHODS/UNASSIGNED:Eligible patients had advanced gastric or gastroesophageal junction adenocarcinoma with measurable disease, Eastern Cooperative Oncology Group ≤ 1, and progression after ≥1 prior therapy, without prior immune checkpoint inhibitor exposure. Patients received pembrolizumab 200 mg i.v. every 21 days and lenvatinib 20 mg orally daily, with a 7-day lead-in. Primary endpoint was objective response rate. Using Simon optimal two-stage design, 29 patients were planned; the study would be considered positive if ≥6 responses were observed. Secondary endpoints included safety, progression-free survival (PFS), and overall survival (OS). RESULTS/UNASSIGNED:Enrollment was prematurely suspended at 24 patients due to evolving practice patterns. Median age was 63 years; 75% were male; 63% were White. Seven patients (29%) received ≥2 lines of therapy. Among 20 assessable patients, 5 (25%) achieved partial responses, including 2 with combined positive score (CPS) <1 tumors. Median duration of response was 31.6 weeks. Median PFS and OS were 12.9 and 21.4 weeks, respectively. Treatment was well tolerated with no new safety signals. CONCLUSIONS/UNASSIGNED:Lenvatinib plus pembrolizumab did not meet the predefined efficacy threshold in the overall cohort. However, treatment was well tolerated and encouraging responses were seen in patients with CPS <1 tumors. Although the sample size was limited, these findings suggest that further investigation of this treatment strategy in patients with CPS < 1 disease may be warranted.
PMCID:13718771
PMID: 42959918
ISSN: 2949-8198
CID: 6074804

Lupus nephritis: Pilot study expanding induction treatment options relying on oral dexamethasone as an alternative to parenteral pulse steroids

Novack, Joshua L; Belmont, H Michael
BackgroundLupus nephritis (LN) affects over 60% of patients with systemic lupus erythematosus and is a risk factor for progression to end stage kidney disease. Guidelines recommend high dose parenteral methylprednisolone "pulses" for induction, although intravenous pulse therapy has not been rigorously compared to oral therapy. In this observational study, we report the outcomes of 17 patients who initiated therapy for LN with high dose oral dexamethasone.MethodsLN patients treated with oral dexamethasone between December 2021, and January 2025, were identified and baseline characteristics were recorded. Patients were assessed for a complete renal response (CRR, uPCR < 500, eGFR > 80%), satisfactory renal response (SRR, uPCR < 700, eGFR > 80%), or partial renal response (PRR, uPCR ≤ half of baseline uPCR, eGFR > 80%) at 1 year after receipt of dexamethasone. Responses were compared to outcomes in the BLISS-LN, AURORA and REGENCY trials.ResultsSeventeen patients with LN treated with induction dexamethasone were identified. The average age was 40 years old, and 15 patients were female. Six patients were of African ancestry, four Hispanic ethnicity, and three were White. Fourteen patients had proliferative LN. 47% of patients achieved a CRR, 59% obtained a SRR, and 53% obtained a PRR. Renal outcomes compared favorably to outcomes in the active arms of the BLISS-LN, AURORA 1, and REGENCY studies. Biomarkers including C3, C4, and dsDNA antibodies improved throughout the period. Proteinuria declined in 14 of 17 patients.ConclusionPatients with LN initially treated with oral dexamethasone in place of intravenous pulse methylprednisolone achieved responses similar to outcomes in recent LN trials. Dexamethasone is a promising potential oral option to initiate treatment for LN obviating need for parenteral therapy.
PMID: 42902573
ISSN: 1477-0962
CID: 6074882

Eight quick tips for using the reactome knowledgebase

Li, Nancy T; Milacic, Marija; Rothfels, Karen; D'Eustachio, Peter
PMCID:13712684
PMID: 42945314
ISSN: 1553-7358
CID: 6074753

Genotype, Phenotypic Severity, and Survival in Pediatric Dilated Cardiomyopathy: A Report From the Pediatric Cardiomyopathy Registry

Kantor, Paul F; Ware, Stephanie M; Chung, Wendy K; Martin, Lisa J; Hamza, Taye; Shi, Ling; Colan, Steven D; Rossano, Joseph W; Towbin, Jeffrey A; Lee, Teresa M; Lal, Ashwin K; Webber, Steven; Canter, Charles E; Hsu, Daphne T; Everitt, Melanie D; Pahl, Elfriede; Bansal, Neha; Ballweg, Jean A; Feingold, Brian; Lytrivi, Irene D; Ryan, Thomas D; Bhatnagar, Surbhi; Aronow, Bruce J; Dexheimer, Phillip J; Schubert, Jeffery A; Lipshultz, Steven E
BACKGROUND/UNASSIGNED:Dilated cardiomyopathy (DCM) frequently presents with heart failure in children. Whether a genetic cause of DCM is associated with disease severity or eventual outcome in pediatric DCM is unclear. METHODS/UNASSIGNED:A multiinstitutional prospective pediatric cohort study (0-18 years) with nonsyndromic DCM was undertaken from 2013 to 2016. A panel of 37 cardiomyopathy-associated genes was interrogated by exome sequencing with analysis for pathogenic or likely pathogenic (LP) variants. Clinical severity and outcomes of death, cardiac transplant, and continuing left ventricular dysfunction versus echocardiographic normalization were assessed. RESULTS/UNASSIGNED:=0.09) toward greater echo normalization, was noted in those without a pathogenic/LP variant by 10 years after diagnosis. CONCLUSIONS/UNASSIGNED:A genetic cause was detected in a minority of children and was not associated with the phenotypic severity of DCM at diagnosis. Echocardiographic normalization of left ventricular function over time was noted more frequently in patients who did not have an identified pathogenic/LP variant.
PMID: 42935448
ISSN: 1941-3297
CID: 6074733