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department:Medicine. General Internal Medicine

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Procedural and 1-year clinical outcomes of orbital atherectomy for treatment of coronary in-stent restenosis: A single-center, retrospective study

Yasumura, Keisuke; Benhuri, Benjamin; Vengrenyuk, Yuliya; Petrov, Artiom; Barman, Nitin; Sweeny, Joseph; Kapur, Vishal; Suleman, Javed; Baber, Usman; Mehran, Roxana; Stone, Gregg W; Kini, Annapoorna S; Sharma, Samin K
OBJECTIVES/OBJECTIVE:We evaluated the procedural and 1-year clinical outcomes of orbital atherectomy (OA) for treatment of coronary in-stent restenosis (ISR). BACKGROUND:The optimal treatment for ISR remains uncertain. While rotational and laser atherectomy have been used as neointimal debulking techniques for ISR, there have been few reports on OA for ISR. METHODS:This is a retrospective observational study of consecutive patients who underwent percutaneous coronary intervention (PCI) for ISR with OA in Mount Sinai catheterization laboratory between November 2013 and January 2018. Procedural success was defined as angiographic success without in-hospital major adverse cardiac events (MACE; the composite of all-cause death, myocardial infarction [MI], or target vessel revascularization). Clinical outcomes were assessed at 1 month and 12 months postprocedure. RESULTS:A total of 87 patients were included in the study. All 87 patients were treated with OA, after which 49 (56.3%) patients also received new drug-eluting stents. Angiographic success was achieved in 87 (100%) patients and procedural success was achieved in 79 (90.8%) patients. In-hospital MACE occurred in 8 (9.2%) patients, all due to periprocedural non-Q-wave MI. Acute lumen gain was 1.19 ± 0.57 mm after OA plus balloon angioplasty and 1.75 ± 0.50 mm after stent placement. MACE within 1 year occurred in 17 (19.5%) patients. CONCLUSIONS:OA for ISR was performed with favorable procedural and 1-year clinical outcomes. Randomized trials are warranted to determine whether OA improves the poor prognosis of patients with ISR treated without debulking.
PMID: 32558218
ISSN: 1522-726x
CID: 4485312

Real-world implementation and impact of a rapid carbapenemase detection test in an area endemic for carbapenem-resistant Enterobacterales

Trzebucki, Alex M; Westblade, Lars F; Loo, Angela; Mazur, Shawn; Jenkins, Stephen G; Calfee, David P; Satlin, Michael J; Simon, Matthew S
A retrospective study was conducted to describe the impact of a molecular assay to detect the most common carbapenemase genes in carbapenem-resistant Enterobacterales isolates recovered in culture. Carbapenemases were detected in 69% of isolates, and assay results guided treatment modifications or epidemiologic investigation in 20% and 4% of cases, respectively.
PMID: 33583476
ISSN: 1559-6834
CID: 4786342

Deep learning models for COVID-19 chest x-ray classification: Preventing shortcut learning using feature disentanglement

Robinson, Caleb; Trivedi, Anusua; Blazes, Marian; Ortiz, Anthony; Desbiens, Jocelyn; Gupta, Sunil; Dodhia, Rahul; Bhatraju, Pavan K; Liles, W Conrad; Lee, Aaron; Kalpathy-Cramer, Jayashree; Lavista Ferres, Juan M
In response to the COVID-19 global pandemic, recent research has proposed creating deep learning based models that use chest radiographs (CXRs) in a variety of clinical tasks to help manage the crisis. However, the size of existing datasets of CXRs from COVID-19+ patients are relatively small, and researchers often pool CXR data from multiple sources, for example, using different x-ray machines in various patient populations under different clinical scenarios. Deep learning models trained on such datasets have been shown to overfit to erroneous features instead of learning pulmonary characteristics -- a phenomenon known as shortcut learning. We propose adding feature disentanglement to the training process, forcing the models to identify pulmonary features from the images while penalizing them for learning features that can discriminate between the original datasets that the images come from. We find that models trained in this way indeed have better generalization performance on unseen data; in the best case we found that it improved AUC by 0.13 on held out data. We further find that this outperforms masking out non-lung parts of the CXRs and performing histogram equalization, both of which are recently proposed methods for removing biases in CXR datasets.
PMCID:7885941
PMID: 33594382
ISSN: n/a
CID: 4786852

The OSPE

Belovarac, Brendan J; Zabar, Sondra R; Warfield, Dana; Bannan, Michael A; Rapkiewicz, Amy V
OBJECTIVES/OBJECTIVE:Resident assessment tends to consist of multiple-choice examinations, even in nuanced areas, such as quality assurance. Internal medicine and many other specialties use objective structured clinical examinations, or OSCEs, to evaluate residents. We adapted the OSCE for pathology, termed the Objective Structured Pathology Examination (OSPE). METHODS:The OSPE was used to evaluate first- and second-year residents over 2 years. The simulation included an anatomic pathology sign-out session, where the resident could be evaluated on diagnostic skills and knowledge of key information for cancer staging reports, as well as simulated frozen-section analysis, where the resident could be evaluated on communication skills with a "surgeon." The OSPE also included smaller cases with challenging quality issues, such as mismatched slides or gross description irregularities. All cases were scored based on the Pathology Milestones created by the Accreditation Council for Graduate Medical Education. RESULTS:Using this OSPE, we were able to demonstrate that simulated experiences can be an appropriate tool for standardized evaluation of pathology residents. CONCLUSIONS:Yearly evaluation using the OSPE could be used to track the progress of both individual residents and the residency program as a whole, identifying problem areas for which further educational content can be developed.
PMID: 33049036
ISSN: 1943-7722
CID: 4632662

A Black man in science Part II : the pursuit of truth [Sound Recording]

Gounder, Celine R; Satcher, David; Varmus, Harold; Dzirasa, Kafui
ORIGINAL:0015292
ISSN: n/a
CID: 4980472

Combining Three Cohorts of World Trade Center Rescue/Recovery Workers for Assessing Cancer Incidence and Mortality

Brackbill, Robert M; Kahn, Amy R; Li, Jiehui; Zeig-Owens, Rachel; Goldfarb, David G; Skerker, Molly; Farfel, Mark R; Cone, James E; Yung, Janette; Walker, Deborah J; Solomon, Adrienne; Qiao, Baozhen; Schymura, Maria J; Dasaro, Christopher R; Kristjansson, Dana; Webber, Mayris P; Luccini, Roberto G; Todd, Andrew C; Prezant, David J; Boffetta, Paolo; Hall, Charles B
Three cohorts including the Fire Department of the City of New York (FDNY), the World Trade Center Health Registry (WTCHR), and the General Responder Cohort (GRC), each funded by the World Trade Center Health Program have reported associations between WTC-exposures and cancer. Results have generally been consistent with effect estimates for excess incidence for all cancers ranging from 6 to 14% above background rates. Pooling would increase sample size and de-duplicate cases between the cohorts. However, pooling required time consuming steps: obtaining Institutional Review Board (IRB) approvals and legal agreements from entities involved; establishing an honest broker for managing the data; de-duplicating the pooled cohort files; applying to State Cancer Registries (SCRs) for matched cancer cases; and finalizing analysis data files. Obtaining SCR data use agreements ranged from 6.5 to 114.5 weeks with six states requiring >20 weeks. Records from FDNY (n = 16,221), WTCHR (n = 29,372), and GRC (n = 33,427) were combined de-duplicated resulting in 69,102 unique individuals. Overall, 7894 cancer tumors were matched to the pooled cohort, increasing the number cancers by as much as 58% compared to previous analyses. Pooling resulted in a coherent resource for future research for studies on rare cancers and mortality, with more representative of occupations and WTC- exposure.
PMID: 33546187
ISSN: 1660-4601
CID: 4779152

Using MALDI-TOF mass spectrometry in peripheral blood for the follow up of newly diagnosed multiple myeloma patients treated with daratumumab-based combination therapy

Eveillard, Marion; Korde, Neha; Ciardiello, Amanda; Diamond, Benjamin; Lesokhin, Alexander; Mailankody, Sham; Smith, Eric; Hassoun, Hani; Hultcrantz, Malin; Shah, Urvi; Lu, Sydney; Salcedo, Meghan; Werner, Kelly; Rispoli, Jenna; Mastey, Donna; Landgren, Ola; Thoren, Katie
BACKGROUND:Daratumumab-based combination therapies have shown high rates of complete response (CR) and minimal residual disease negativity in patients with multiple myeloma. However, daratumumab, an IgGĶ monoclonal antibody, interferes with electrophoretic techniques making it difficult to reliably define residual disease versus CR, especially in patients with IgGĶ multiple myeloma. METHODS:Enrichment with polyclonal sheep antibody-coated magnetic microparticles combined with MALDI-TOF mass spectrometry (MALDI-TOF MS) analysis was used to detect M-proteins in serial samples from newly diagnosed multiple myeloma patients treated with daratumumab-based therapy. The performance of the MALDI-TOF MS assay was compared to that of a routine test panel (serum protein electrophoresis (SPEP), immunofixation (IFE) and serum free light chain (FLC)). RESULTS:Comparison of MALDI-TOF MS to SPEP/IFE/FLC showed a concordance of 84.9% (p<0.001). When MALDI-TOF MS and FLC results were combined, the M-protein detection rate was the same or better than the routine test panel. For the 9 patients who obtained CR during follow-up, MALDI-TOF MS detected an M-protein in 46% of subsequent samples. Daratumumab could be distinguished from the M-protein in 215/222 samples. CONCLUSION/CONCLUSIONS:MALDI-TOF MS is useful in assessing CR in patients treated with monoclonal antibody-based therapies.
PMID: 33545108
ISSN: 1873-3492
CID: 4776762

Hospitalizations for Chronic Disease and Acute Conditions in the Time of COVID-19

Blecker, Saul; Jones, Simon A; Petrilli, Christopher M; Admon, Andrew J; Weerahandi, Himali; Francois, Fritz; Horwitz, Leora I
PMID: 33104158
ISSN: 2168-6114
CID: 4645722

Burden of Neurological Disorders Across the US From 1990-2017: A Global Burden of Disease Study

,; Feigin, Valery L; Vos, Theo; Alahdab, Fares; Amit, Arianna Maever L; Bärnighausen, Till Winfried; Beghi, Ettore; Beheshti, Mahya; Chavan, Prachi P; Criqui, Michael H; Desai, Rupak; Dhamminda Dharmaratne, Samath; Dorsey, E Ray; Wilder Eagan, Arielle; Elgendy, Islam Y; Filip, Irina; Giampaoli, Simona; Giussani, Giorgia; Hafezi-Nejad, Nima; Hole, Michael K; Ikeda, Takayoshi; Owens Johnson, Catherine; Kalani, Rizwan; Khatab, Khaled; Khubchandani, Jagdish; Kim, Daniel; Koroshetz, Walter J; Krishnamoorthy, Vijay; Krishnamurthi, Rita V; Liu, Xuefeng; Lo, Warren David; Logroscino, Giancarlo; Mensah, George A; Miller, Ted R; Mohammed, Salahuddin; Mokdad, Ali H; Moradi-Lakeh, Maziar; Morrison, Shane Douglas; Shivamurthy, Veeresh Kumar N; Naghavi, Mohsen; Nichols, Emma; Norrving, Bo; Odell, Christopher M; Pupillo, Elisabetta; Radfar, Amir; Roth, Gregory A; Shafieesabet, Azadeh; Sheikh, Aziz; Sheikhbahaei, Sara; Shin, Jae Il; Singh, Jasvinder A; Steiner, Timothy J; Stovner, Lars Jacob; Wallin, Mitchell Taylor; Weiss, Jordan; Wu, Chenkai; Zunt, Joseph Raymond; Adelson, Jaimie D; Murray, Christopher J L
IMPORTANCE:Accurate and up-to-date estimates on incidence, prevalence, mortality, and disability-adjusted life-years (burden) of neurological disorders are the backbone of evidence-based health care planning and resource allocation for these disorders. It appears that no such estimates have been reported at the state level for the US. OBJECTIVE:To present burden estimates of major neurological disorders in the US states by age and sex from 1990 to 2017. DESIGN, SETTING, AND PARTICIPANTS:This is a systematic analysis of the Global Burden of Disease (GBD) 2017 study. Data on incidence, prevalence, mortality, and disability-adjusted life-years (DALYs) of major neurological disorders were derived from the GBD 2017 study of the 48 contiguous US states, Alaska, and Hawaii. Fourteen major neurological disorders were analyzed: stroke, Alzheimer disease and other dementias, Parkinson disease, epilepsy, multiple sclerosis, motor neuron disease, migraine, tension-type headache, traumatic brain injury, spinal cord injuries, brain and other nervous system cancers, meningitis, encephalitis, and tetanus. EXPOSURES:Any of the 14 listed neurological diseases. MAIN OUTCOME AND MEASURE:Absolute numbers in detail by age and sex and age-standardized rates (with 95% uncertainty intervals) were calculated. RESULTS:The 3 most burdensome neurological disorders in the US in terms of absolute number of DALYs were stroke (3.58 [95% uncertainty interval [UI], 3.25-3.92] million DALYs), Alzheimer disease and other dementias (2.55 [95% UI, 2.43-2.68] million DALYs), and migraine (2.40 [95% UI, 1.53-3.44] million DALYs). The burden of almost all neurological disorders (in terms of absolute number of incident, prevalent, and fatal cases, as well as DALYs) increased from 1990 to 2017, largely because of the aging of the population. Exceptions for this trend included traumatic brain injury incidence (-29.1% [95% UI, -32.4% to -25.8%]); spinal cord injury prevalence (-38.5% [95% UI, -43.1% to -34.0%]); meningitis prevalence (-44.8% [95% UI, -47.3% to -42.3%]), deaths (-64.4% [95% UI, -67.7% to -50.3%]), and DALYs (-66.9% [95% UI, -70.1% to -55.9%]); and encephalitis DALYs (-25.8% [95% UI, -30.7% to -5.8%]). The different metrics of age-standardized rates varied between the US states from a 1.2-fold difference for tension-type headache to 7.5-fold for tetanus; southeastern states and Arkansas had a relatively higher burden for stroke, while northern states had a relatively higher burden of multiple sclerosis and eastern states had higher rates of Parkinson disease, idiopathic epilepsy, migraine and tension-type headache, and meningitis, encephalitis, and tetanus. CONCLUSIONS AND RELEVANCE:There is a large and increasing burden of noncommunicable neurological disorders in the US, with up to a 5-fold variation in the burden of and trends in particular neurological disorders across the US states. The information reported in this article can be used by health care professionals and policy makers at the national and state levels to advance their health care planning and resource allocation to prevent and reduce the burden of neurological disorders.
PMCID:7607495
PMID: 33136137
ISSN: 2168-6157
CID: 5704682

Biomarkers of inflammation and repair in kidney disease progression

Puthumana, Jeremy; Thiessen-Philbrook, Heather; Xu, Leyuan; Coca, Steven G; Garg, Amit X; Himmelfarb, Jonathan; Bhatraju, Pavan K; Ikizler, Talat Alp; Siew, Edward; Ware, Lorraine B; Liu, Kathleen D; Go, Alan S; Kaufman, James S; Kimmel, Paul L; Chinchilli, Vernon M; Cantley, Lloyd; Parikh, Chirag R
INTRODUCTION/BACKGROUND:Acute kidney injury and chronic kidney disease (CKD) are common in hospitalized patients. To inform clinical decision-making, more accurate information regarding risk of long-term progression to kidney failure is required. METHODS:We enrolled 1538 hospitalized patients in a multicenter, prospective cohort study. Monocyte chemoattractant protein-1 (MCP-1/CCL2), uromodulin (UMOD), and YKL-40 (CHI3L1) were measured in urine samples collected during outpatient follow-up at 3 months. We followed patients for a median of 4.3 years and assessed the relationship between biomarker levels and changes in estimated glomerular filtration rate (eGFR) over time and the development of a composite kidney outcome (CKD incidence, CKD progression, or end-stage renal disease). We paired these clinical studies with investigations in mouse models of renal atrophy and renal repair to further understand the molecular basis of these markers in kidney disease progression. RESULTS:Higher MCP-1 and YKL-40 levels were associated with greater eGFR decline and increased incidence of the composite renal outcome, whereas higher UMOD levels were associated with smaller eGFR declines and decreased incidence of the composite kidney outcome. A multimarker score increased prognostic accuracy and reclassification compared with traditional clinical variables alone. The mouse model of renal atrophy showed greater Ccl2 and Chi3l1 mRNA expression in infiltrating macrophages and neutrophils, respectively, and evidence of progressive renal fibrosis compared with the repair model. The repair model showed greater Umod expression in the loop of Henle and correspondingly less fibrosis. CONCLUSIONS:Biomarker levels at 3 months after hospitalization identify patients at risk for kidney disease progression. FUNDING/BACKGROUND:National Institutes of Health grants U01DK082223, U01DK082185, U01DK082192, U01DK082183, R01HL085757, R01DK098233, R01DK101507, R01DK114014, K23DK100468, R03DK111881, R01DK093771, K01DK120783, P30DK079310, P30DK114809.
PMID: 33290282
ISSN: 1558-8238
CID: 4708812