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Clinical and genomic signatures of SARS-CoV-2 Delta breakthrough infections in New York

Duerr, Ralf; Dimartino, Dacia; Marier, Christian; Zappile, Paul; Levine, Samuel; Francois, Fritz; Iturrate, Eduardo; Wang, Guiqing; Dittmann, Meike; Lighter, Jennifer; Elbel, Brian; Troxel, Andrea B; Goldfeld, Keith S; Heguy, Adriana
BACKGROUND:In 2021, Delta became the predominant SARS-CoV-2 variant worldwide. While vaccines have effectively prevented COVID-19 hospitalization and death, vaccine breakthrough infections increasingly occurred. The precise role of clinical and genomic determinants in Delta infections is not known, and whether they contributed to increased rates of breakthrough infections compared to unvaccinated controls. METHODS:We studied SARS-CoV-2 variant distribution, dynamics, and adaptive selection over time in relation to vaccine status, phylogenetic relatedness of viruses, full genome mutation profiles, and associated clinical and demographic parameters. FINDINGS/RESULTS:We show a steep and near-complete replacement of circulating variants with Delta between May and August 2021 in metropolitan New York. We observed an increase of the Delta sublineage AY.25 (14% in vaccinated, 7% in unvaccinated), its spike mutation S112L, and AY.44 (8% in vaccinated, 2% in unvaccinated) with its nsp12 mutation F192V in breakthroughs. Delta infections were associated with younger age and lower hospitalization rates than Alpha. Delta breakthrough infections increased significantly with time since vaccination, and, after adjusting for confounders, they rose at similar rates as in unvaccinated individuals. INTERPRETATION/CONCLUSIONS:We observed a modest adaptation of Delta genomes in breakthrough infections in New York, suggesting an improved genomic framework to support Delta's epidemic growth in times of waning vaccine protection despite limited impact on vaccine escape. FUNDING/BACKGROUND:The study was supported by NYU institutional funds. The NYULH Genome Technology Center is partially supported by the Cancer Center Support Grant P30CA016087 at the Laura and Isaac Perlmutter Cancer Center.
PMCID:9323230
PMID: 35906172
ISSN: 2352-3964
CID: 5277042

Comparison of four handheld point-of-care ultrasound devices by expert users

Le, Minh-Phuong T; Voigt, Lara; Nathanson, Robert; Maw, Anna M; Johnson, Gordon; Dancel, Ria; Mathews, Benji; Moreira, Alvaro; Sauthoff, Harald; Gelabert, Christopher; Kurian, Linda M; Dumovich, Jenna; Proud, Kevin C; Solis-McCarthy, Jessica; Candotti, Carolina; Dayton, Christopher; Arena, Alexander; Boesch, Brandon; Flores, Saul; Foster, Mark T; Villalobos, Nicholas; Wong, Tanping; Ortiz-Jaimes, Gabriel; Mader, Michael; Sisson, Craig; Soni, Nilam J
BACKGROUND:Point-of-care ultrasound (POCUS) is rapidly becoming ubiquitous across healthcare specialties. This is due to several factors including its portability, immediacy of results to guide clinical decision-making, and lack of radiation exposure to patients. The recent growth of handheld ultrasound devices has improved access to ultrasound for many clinicians. Few studies have directly compared different handheld ultrasound devices among themselves or to cart-based ultrasound machines. We conducted a prospective observational study comparing four common handheld ultrasound devices for ease of use, image quality, and overall satisfaction. Twenty-four POCUS experts utilized four handheld devices (Butterfly iQ+â„¢ by Butterfly Network Inc., Kosmosâ„¢ by EchoNous, Vscan Airâ„¢ by General Electric, and Lumifyâ„¢ by Philips Healthcare) to obtain three ultrasound views on the same standardized patients using high- and low-frequency probes. RESULTS:Data were collected from 24 POCUS experts using all 4 handheld devices. No single ultrasound device was superior in all categories. For overall ease of use, the Vscan Airâ„¢ was rated highest, followed by the Lumifyâ„¢. For overall image quality, Lumifyâ„¢ was rated highest, followed by Kosmosâ„¢. The Lumifyâ„¢ device was rated highest for overall satisfaction, while the Vscan Airâ„¢ was rated as the most likely to be purchased personally and carried in one's coat pocket. The top 5 characteristics of handheld ultrasound devices rated as being "very important" were image quality, ease of use, portability, total costs, and availability of different probes. CONCLUSIONS:In a comparison of four common handheld ultrasound devices in the United States, no single handheld ultrasound device was perceived to have all desired characteristics. POCUS experts rated the Lumifyâ„¢ highest for image quality and Vscan Airâ„¢ highest for ease of use. Overall satisfaction was highest with the Lumifyâ„¢ device, while the most likely to be purchased as a pocket device was the Vscan Airâ„¢. Image quality was felt to be the most important characteristic in evaluating handheld ultrasound devices.
PMCID:9263020
PMID: 35796842
ISSN: 2524-8987
CID: 5280522

[S.l.] : KevinMD.com, 2022

Getting an appointment with primary care is the Achilles’ heel of medicine

Ofri, Danielle
(Website)
CID: 5284682

Childcare Stress, Burnout, and Intent to Reduce Hours or Leave the Job During the COVID-19 Pandemic Among US Health Care Workers

Harry, Elizabeth M; Carlasare, Lindsey E; Sinsky, Christine A; Brown, Roger L; Goelz, Elizabeth; Nankivil, Nancy; Linzer, Mark
IMPORTANCE:Childcare stress (CCS) is high during the COVID-19 pandemic because of remote learning and fear of illness transmission in health care workers (HCWs). Associations between CCS and burnout, intent to reduce (ITR) hours, and intent to leave (ITL) are not known. OBJECTIVE:To determine associations between CCS, anxiety and depression, burnout, ITR in 1 year, and ITL in 2 years. DESIGN, SETTING, AND PARTICIPANTS:This survey study, Coping with COVID, a brief work-life and wellness survey of US HCWs, was conducted between April and December 2020, assessing CCS, burnout, anxiety, depression, workload, and work intentions. The survey was distributed to clinicians and staff in participating health care organizations with more than 100 physicians. Data were analyzed from October 2021 to May 2022. MAIN OUTCOMES AND MEASURES:The survey asked, "due to…COVID-19, I am experiencing concerns about childcare," and the presence of CCS was considered as a score of 3 or 4 on a scale from 1, not at all, to 4, a great extent. The survey also asked about fear of exposure or transmission, anxiety, depression, workload, and single-item measures of burnout, ITR, and ITL. RESULTS:In 208 organizations, 58 408 HCWs (15 766 physicians [26.9%], 11 409 nurses [19.5%], 39 218 women [67.1%], and 33 817 White participants [57.9%]) responded with a median organizational response rate of 32%. CCS was present in 21% (12 197 respondents) of HCWs. CCS was more frequent among racial and ethnic minority individuals and those not identifying race or ethnicity vs White respondents (5028 respondents [25.2%] vs 6356 respondents [18.8%]; P < .001; proportional difference, -7.1; 95% CI, -7.8 to -6.3) and among women vs men (8281 respondents [21.1%] vs 2573 respondents [17.9%]; odds ratio [OR], 1.22; 95% CI, 1.17 to 1.29). Those with CCS had 115% greater odds of anxiety or depression (OR, 2.15; 95% CI, 2.04-2.26; P < .001), and 80% greater odds of burnout (OR, 1.80; 95% CI, 1.70-1.90; P < .001) vs indidivuals without CCS. High CCS was associated with 91% greater odds of ITR (OR, 1.91; 95% CI, 1.76 to 2.08; P < .001) and 28% greater odds of ITL (OR, 1.28; 95% CI, 1.17 to 1.40; P < .001). CONCLUSIONS AND RELEVANCE:In this survey study, CCS was disproportionately described across different subgroups of HCWs and was associated with anxiety, depression, burnout, ITR, and ITL. Addressing CCS may improve HCWs' quality of life and HCW retention and work participation.
PMCID:9294994
PMID: 35849398
ISSN: 2574-3805
CID: 5948662

426 Impact Of Visceral Abdominal Tissue On Coronary Artery Disease As Defined By Quantitative Computed Tomographic Angiography [Meeting Abstract]

Karlsberg, D; Steyer, H; Fisher, R; Crabtree, T; Min, J; Earls, J; Rumberger, J
Introduction: Obesity has long been associated with all-cause mortality and cardiovascular disease (CVD). Visceral abdominal tissue (VAT) has been proposed as an important CVD risk stratification metric given its independent correlation with myocardial infarction and stroke. This study aims to clarify the relationship between the presence and severity of VAT with the presence and severity of coronary artery plaque as defined by total plaque volume, calcified plaque volume, non-calcified plaque volume, and high risk low-density non-calcified plaque using quantitative coronary computed tomography atherosclerosis imaging (AI-QCT).
Method(s): CCTA was performed using single or dual source CT scanners of >64-detector rows. Coronary atherosclerosis evaluation by CCTA (AI-QCT) was performed. The AI-based approach to CCTA interpretation in this study was performed using an FDA-cleared software service (Cleerly Lab, Cleerly, New York, NY) that performs automated analysis of CCTA using a series of validated convolutional neural network models (including VGG19 network, 3D U-Net, and VGG Network Variant) for image quality assessment, coronary segmentation and labeling, lumen wall evaluation and vessel contour determination and plaque characterization. Coronary segments with a diameter >1.5 mm were included in the analysis using the modified 18-segment SCCT model. Plaque volume was categorized using Hounsfield unit (HU) ranges, with LD-NCP defined as plaques <30 HU, NCP defined as HU between -30 and +350, and CP defined as >350 HU12,13.
Result(s): The study cohort was comprised of 145 patients, 56.1 +/- 8.5 years, 84.0% male. Overall, 3.5% had a history of diabetes, 19% hypertension, 38% dyslipidemia, 8% current smokers, and 34% had a family history of CAD. At the time of the examination, 37% were taking statins, 21% anti-hypertension medications, and 11% non-stating lipid lowering medication. There was a stepwise progression of the median coronary plaque volume for each quartile of visceral fat including TPV (Q1: 19.8, Q2: 48.1, Q3: 86.4, and Q4: 136.6 mm3 (P=0.0098)), NCP (Q1: 15.7, Q2: 35.4, Q3: 86.4, and Q4: 136.6 mm3 (P=0.0032)) and LD-NCP (Q1: 0.6, Q2: 0.81, Q3: 2.0, and Q4: 5.0 mm3 (P<0.0001)). There was also a stepwise progression of the median maximum diameter stenosis for each quartile of visceral fat (Q1: 18.0, Q2: 27.0, Q3: 27.5, and Q4: 29.5% (P=0.0414)) as well as medial coronary plaque length (Q1: 12.8, Q2: 19.5, Q3: 26.4, and Q4: 27.5mm (P=0.0077))
Conclusion(s): Our findings represent the first demonstration of a stepwise progression with regards to visceral abdominal tissue and total plaque volume, non-calcified plaque volume, and low density non-calcified plaque volume. This relationship is particularly striking with regards to the progression and severity of VAT and the presence and amount of low density non-calcified plaque, which is known to be high risk for cardiovascular events.
Copyright
EMBASE:2019317971
ISSN: 1876-861x
CID: 5291842

Weekly dose-dense chemotherapy in first-line epithelial ovarian, fallopian tube, or primary peritoneal cancer treatment (ICON8): overall survival results from an open-label, randomised, controlled, phase 3 trial

Clamp, Andrew R; James, Elizabeth C; McNeish, Iain A; Dean, Andrew; Kim, Jae-Won; O'Donnell, Dearbhaile M; Gallardo-Rincon, Dolores; Blagden, Sarah; Brenton, James; Perren, Tim J; Sundar, Sudha; Lord, Rosemary; Dark, Graham; Hall, Marcia; Banerjee, Susana; Glasspool, Rosalind M; Hanna, C Louise; Williams, Sarah; Scatchard, Kate M; Nam, Helena; Essapen, Sharadah; Parkinson, Christine; McAvan, Lucy; Swart, Ann Marie; Popoola, Babasola; Schiavone, Francesca; Badrock, Jonathan; Fananapazir, Fuad; Cook, Adrian D; Parmar, Mahesh; Kaplan, Richard; Ledermann, Jonathan A
BACKGROUND:Standard-of-care first-line chemotherapy for epithelial ovarian cancer is carboplatin and paclitaxel administered once every 3 weeks. The JGOG 3016 trial reported significant improvement in progression-free and overall survival with dose-dense weekly paclitaxel and 3-weekly (ie, once every 3 weeks) carboplatin. However, this benefit was not observed in the previously reported progression-free survival results of ICON8. Here, we present the final coprimary outcomes of overall survival and updated progression-free survival analyses of ICON8. METHODS:(group 3), all administered via intravenous infusion for a total of six 21-day cycles. Coprimary outcomes were progression-free survival and overall survival, with comparisons done between group 2 and group 1, and group 3 and group 1, in the intention-to-treat population. Safety was assessed in all patients who started at least one chemotherapy cycle. The trial is registered on ClinicalTrials.gov, NCT01654146, and ISRCTN registry, ISRCTN10356387, and is closed to accrual. FINDINGS:Between June 6, 2011, and Nov 28, 2014, 1566 patients were randomly assigned to group 1 (n=522), group 2 (n=523), or group 3 (n=521). The median age was 62 years (IQR 54-68), 1073 (69%) of 1566 patients had high-grade serous carcinoma, 1119 (71%) had stage IIIC-IV disease, and 745 (48%) had IPS. As of data cutoff (March 31, 2020), with a median follow-up of 69 months (IQR 61-75), no significant difference in overall survival was observed in either comparison: median overall survival of 47·4 months (95% CI 43·1-54·8) in group 1, 54·8 months (46·6-61·6) in group 2, and 53·4 months (49·2-59·6) in group 3 (group 2 vs group 1: hazard ratio 0·87 [97·5% CI 0·73-1·05]; group 3 vs group 1: 0·91 [0·76-1·09]). No significant difference was observed for progression-free survival in either comparison and evidence of non-proportional hazards was seen (p=0·037), with restricted mean survival time of 23·9 months (97·5% CI 22·1-25·6) in group 1, 25·3 months (23·6-27·1) in group 2, and 24·8 months (23·0-26·5) in group 3. The most common grade 3-4 adverse events were reduced neutrophil count (78 [15%] of 511 patients in group 1, 183 [36%] of 514 in group 2, and 154 [30%] of 513 in group 3), reduced white blood cell count (22 [4%] in group 1, 80 [16%] in group 2, and 71 [14%] in group 3), and anaemia (26 [5%] in group 1, 66 [13%] in group 2, and 24 [5%] in group 3). No new serious adverse events were reported. Seven treatment-related deaths were reported (two in group 1, four in group 2, and one in group 3). INTERPRETATION:In our cohort of predominantly European women with epithelial ovarian cancer, we found that first-line weekly dose-dense chemotherapy did not improve overall or progression-free survival compared with standard 3-weekly chemotherapy and should not be used as part of standard multimodality front-line therapy in this patient group. FUNDING:Cancer Research UK, Medical Research Council, Health Research Board in Ireland, Irish Cancer Society, and Cancer Australia.
PMCID:9630160
PMID: 35690073
ISSN: 1474-5488
CID: 5942402

Perceptions and behaviors of learner engagement with virtual educational platforms

Dickinson, K J; Caldwell, K E; Graviss, E A; Nguyen, D T; Awad, M M; Olasky, J; Tan, S; Winer, J H; Pei, K Y; ,
BACKGROUND:The COVID-19 pandemic has increased utilization of educational technology for surgical education. Our aim was to determine attitudes and behaviors of surgical education champions towards virtual educational platforms and learner engagement. METHODS:An electronic survey was distributed to all Association of Surgical Education members addressing i) methods of engagement in virtual learning ii) ways to improve engagement and iii) what influences engagement. Stratified analysis was used to evaluate differences in responses by age, gender, level of training and specialty. RESULTS:154 ASE members completed the survey (13% response rate). 88% respondents accessed virtual learning events at home. Most (87%) had joined a virtual learning event and then participated in another activity. 1 in 5 who did this did so "always" or "often". Female respondents were more likely than males to join audio and then participate in another activity (62.3% v 37.7%, p = 0.04). CONCLUSIONS:Virtual platforms do not automatically translate into increased learner engagement. Careful design of educational strategies is essential to increase and maintain learner engagement when utilizing virtual surgical education.
PMCID:8853863
PMID: 35184816
ISSN: 1879-1883
CID: 5772332

Dimensional Analysis of Shared Decision Making in Contraceptive Counseling

Gerchow, Lauren; Squires, Allison
OBJECTIVE:To conduct a dimensional analysis to identify conceptual gaps around shared decision making (SDM) in reproductive health care and to refine the conceptual definition of SDM as related to contraceptive counseling. DATA SOURCES:We identified source data through systematic searches of the CINAHL and PubMed databases. STUDY SELECTION:We included peer-reviewed research and nonresearch articles that addressed contraceptive counseling for pregnancy prevention in the United States. We did not consider date of publication as an inclusion criterion. We included 35 articles in the final review. DATA EXTRACTION:Using dimensional analysis, we extracted data to clarify the definition of SDM as a socially constructed concept that varies by perspective and context. DATA SYNTHESIS:Data synthesis enabled us to compare SDM from patient and provider perspectives and to identify four primary dimensions of SDM that varied by context: Patient Preferences, Relationship, Provider Bias, and Clinical Suitability. CONCLUSION:The four dimensions we identified illustrate the complexity and depth of SDM in contraceptive counseling encounters and broaden the definition of SDM to more than an encounter in which decision making incorporates clinician expertise and patient participation. We identified several assumptions that indicate the need for improved understanding that SDM is not a universal concept across perspectives and contexts. Most researchers in the included articles addressed the Patient Preferences dimension. Fewer considered the patient-provider relationship, the effect of provider bias, and the effect of specific clinical circumstances on SDM. We propose a conceptual map and model that can be used to refine the concepts that inform SDM and guide providers and researchers. Future research is needed to address the remaining gaps.
PMID: 35605641
ISSN: 1552-6909
CID: 5388052

Preventing driveline infection during left ventricular assist device support by the HeartMate 3: A survey-based study

Saeed, Omar; Moss, Noah; Barrus, Bryan; Vidula, Himabindu; Shah, Samit; Feitell, Scott; Masser, Kristi S; Kilic, Arman; Moin, Danyaal; Atluri, Pavan; Barati, Edo
PURPOSE/OBJECTIVE:Driveline infection (DLI) is a significant source of morbidity and mortality during left ventricular assist device (LVAD) support yet limited studies are available to describe the center-level prevalence, preventive practices, and their potential effectiveness. METHODS:We surveyed LVAD centers in the United States to determine program burden and preventive practices for DLI during HeartMate (HM) 3 support. An online, anonymous, question-based survey was sent to expert providers at implanting centers. Only a single respondent completed the survey for each center. As an exploratory analysis, we compared specific DLI preventive practices between centers with low (≤10%) and high (>10%) reported prevalence of DLI. RESULTS:Seventy-eight centers responded to the survey (response rate: 50%). Respondents were comprised of 37 (47%) heart failure cardiologists, 27 (35%) LVAD coordinators, and 14 (18%) cardiothoracic surgeons. The prevalence of DLI during HM3 was reported as ≤10% by 27 (35%), 11%-25% by 36 (46%), and >25% by 16 (19%) centers. Thirteen (17%) centers had a body mass index threshold for device placement, 29 (37%) utilized a counter incision, 66 (81%) placed an anchor stitch, and 69 (88%) used an external device to stabilize the DL. Proportionally, more centers with a low DLI prevalence used a wound vacuum 6 (22%) versus 3 (6%, p = 0.03) than those with high DLI. CONCLUSION/CONCLUSIONS:Variation exists in reported prevalence and practices of preventing and managing driveline infections across centers during HM3 support. Further studies are warranted to develop and assess the effectiveness of standardized preventive strategies.
PMID: 35083754
ISSN: 1525-1594
CID: 5348432

Palliative Care Needs and Clinical Outcomes of Patients with Advanced Cancer in the Emergency Department

Yilmaz, Sule; Grudzen, Corita R; Durham, Danielle D; McNaughton, Caroline; Marcelin, Isabelle; Abar, Beau; Adler, David; Bastani, Aveh; Baugh, Christopher W; Bernstein, Steven L; Bischof, Jason J; Coyne, Christopher J; Henning, Daniel J; Hudson, Matthew F; Klotz, Adam; Lyman, Gary H; Madsen, Troy E; Pallin, Daniel J; Reyes-Gibby, Cielito; Rico, Juan Felipe; Ryan, Richard J; Shapiro, Nathan I; Swor, Robert; Thomas, Charles R; Venkat, Arvind; Wilson, Jason; Yeung, Sai-Ching Jim; Caterino, Jeffrey M
PMID: 35559758
ISSN: 1557-7740
CID: 5214912