Searched for: school:SOM
Department/Unit:Neuroscience Institute
Computational Design and Synthesis of a Deeply Red-Shifted and Bistable Azobenzene
Konrad, David B; Savasci, Gökcen; Allmendinger, Lars; Trauner, Dirk; Ochsenfeld, Christian; Ali, Ahmed M
We computationally dissected the electronic and geometrical influences of ortho-chlorinated azobenzenes on their photophysical properties. X-ray analysis provided the insight that trans-tetra-ortho-chloro azobenzene is conformationally flexible and thus subject to molecular motions. This allows the photoswitch to adopt a range of red-shifted geometries, which account for the extended n → π* band tails. On the basis of our results, we designed the di-ortho-fluoro di-ortho-chloro (dfdc) azobenzene and provided computational evidence for the superiority of this substitution pattern to tetra-ortho-chloro azobenzene. Thereafter, we synthesized dfdc azobenzene by ortho-chlorination via 2-fold C-H activation and experimentally confirmed its structural and photophysical properties through UV-vis, NMR, and X-ray analyses. The advantages include near-bistable isomers and an increased separation of the n → π* bands between the trans- and cis-conformations, which allows for the generation of unusually high levels of the cis-isomer by irradiation with green/yellow light as well as red light within the biooptical window.
PMID: 32207943
ISSN: 1520-5126
CID: 4481662
Experience- and Context-Dependent Modulation of the Invertebrate Compass System
Currier, Timothy A; Nagel, Katherine I
How are head direction signals computed and maintained in neural circuits? In this issue of Neuron, Shiozaki et al. (2020) expand our understanding of the fly "compass" network, revealing context- and experience-dependent changes in the multiplexed encoding of head direction and steering maneuvers.
PMID: 32272068
ISSN: 1097-4199
CID: 4379002
Optical Control of Cytokine Production Using Photoswitchable Galactosylceramides
Trauner, Dirk; Hartrampf, Nina; Seki, Toshiyuki; Baumann, Andreas; Watson, Philip; Hoffmann-Röder, Anja; Tsuji, Moriya; Veprek, Nynke; Hetzler, Belinda
Alpha-Galactosylceramides are glycosphingolipids that show promise in cancer immunotherapy. After presentation by CD1d they activate natural killer T cells (NKT), which results in the production of a variety of pro-inflammatory and immunomodulatory cytokines. Here we report the synthesis and biological evaluation of photochromic derivatives of KRN-7000, the activity of which can be modulated with light. Based on established structure-activity relationships, we designed photoswitchable analogs of this glycolipid that control the production of pro-inflammatory cytokines, such as IFN-γ. The azobenzene derivative α-GalACer-4 proved to be more potent than KRN-7000 itself when activated with 380 nm light. Photolipids of this type could improve our mechanistic understanding of cytokine production and could open new directions in photoimmunotherapy.
PMID: 31788876
ISSN: 1521-3765
CID: 4217922
Prevention of connexin-43 remodeling protects against Duchenne muscular dystrophy cardiomyopathy
Himelman, Eric; Lillo, Mauricio A; Nouet, Julie; Gonzalez, J Patrick; Zhao, Qingshi; Xie, Lai-Hua; Li, Hong; Liu, Tong; Wehrens, Xander Ht; Lampe, Paul D; Fishman, Glenn I; Shirokova, Natalia; Contreras, Jorge E; Fraidenraich, Diego
Aberrant expression of the cardiac gap junction protein connexin-43 (Cx43) has been suggested as playing a role in the development of cardiac disease in the mdx mouse model of Duchenne muscular dystrophy (DMD); however, a mechanistic understanding of this association is lacking. Here, we identified a reduction of phosphorylation of Cx43 serines S325/S328/S330 in human and mouse DMD hearts. We hypothesized that hypophosphorylation of Cx43 serine-triplet triggers pathological Cx43 redistribution to the lateral sides of cardiomyocytes (remodeling). Therefore, we generated knockin mdx mice in which the Cx43 serine-triplet was replaced with either phospho-mimicking glutamic acids (mdxS3E) or nonphosphorylatable alanines (mdxS3A). The mdxS3E, but not mdxS3A, mice were resistant to Cx43 remodeling, with a corresponding reduction of Cx43 hemichannel activity. MdxS3E cardiomyocytes displayed improved intracellular Ca2+ signaling and a reduction of NADPH oxidase 2 (NOX2)/ROS production. Furthermore, mdxS3E mice were protected against inducible arrhythmias, related lethality, and the development of cardiomyopathy. Inhibition of microtubule polymerization by colchicine reduced both NOX2/ROS and oxidized CaMKII, increased S325/S328/S330 phosphorylation, and prevented Cx43 remodeling in mdx hearts. Together, these results demonstrate a mechanism of dystrophic Cx43 remodeling and suggest that targeting Cx43 may be a therapeutic strategy for preventing heart dysfunction and arrhythmias in DMD patients.
PMCID:7108916
PMID: 31910160
ISSN: 1558-8238
CID: 4386202
Computational Markers of Risky Decision-making for Identification of Temporal Windows of Vulnerability to Opioid Use in a Real-world Clinical Setting
Konova, Anna B; Lopez-Guzman, Silvia; Urmanche, Adelya; Ross, Stephen; Louie, Kenway; Rotrosen, John; Glimcher, Paul W
Importance/UNASSIGNED:Opioid addiction is a major public health problem. Despite availability of evidence-based treatments, relapse and dropout are common outcomes. Efforts aimed at identifying reuse risk and gaining more precise understanding of the mechanisms conferring reuse vulnerability are needed. Objective/UNASSIGNED:To use tools from computational psychiatry and decision neuroscience to identify changes in decision-making processes preceding opioid reuse. Design, Setting, and Participants/UNASSIGNED:A cohort of individuals with opioid use disorder were studied longitudinally at a community-based treatment setting for up to 7 months (1-15 sessions per person). At each session, patients completed a risky decision-making task amenable to computational modeling and standard clinical assessments. Time-lagged mixed-effects logistic regression analyses were used to assess the likelihood of opioid use between sessions (t to t + 1; within the subsequent 1-4 weeks) from data acquired at the current session (t). A cohort of control participants completed similar procedures (1-5 sessions per person), serving both as a baseline comparison group and an independent sample in which to assess measurement test-retest reliability. Data were analyzed between January 1, 2018, and September 5, 2019. Main Outcomes and Measures/UNASSIGNED:Two individual model-based behavioral markers were derived from the task completed at each session, capturing a participant's current tolerance of known risks and ambiguity (partially unknown risks). Current anxiety, craving, withdrawal, and nonadherence were assessed via interview and clinic records. Opioid use was ascertained from random urine toxicology tests and self-reports. Results/UNASSIGNED:Seventy patients (mean [SE] age, 44.7 [1.3] years; 12 women and 58 men [82.9% male]) and 55 control participants (mean [SE] age, 42.4 [1.5] years; 13 women and 42 men [76.4% male]) were included. Of the 552 sessions completed with patients (mean [SE], 7.89 [0.59] sessions per person), 252 (45.7%) directly preceded opioid use events (mean [SE], 3.60 [0.44] sessions per person). From the task parameters, only ambiguity tolerance was significantly associated with increased odds of prospective opioid use (adjusted odds ratio, 1.37 [95% CI, 1.07-1.76]), indicating patients were more tolerant specifically of ambiguous risks prior to these use events. The association of ambiguity tolerance with prospective use was independent of established clinical factors (adjusted odds ratio, 1.29 [95% CI, 1.01-1.65]; P = .04), such that a model combining these factors explained more variance in reuse risk. No significant differences in ambiguity tolerance were observed between patients and control participants, who completed 197 sessions (mean [SE], 3.58 [0.21] sessions per person); however, patients were more tolerant of known risks (B = 0.56 [95% CI, 0.05-1.07]). Conclusions and Relevance/UNASSIGNED:Computational approaches can provide mechanistic insights about the cognitive factors underlying opioid reuse vulnerability and may hold promise for clinical use.
PMID: 31812982
ISSN: 2168-6238
CID: 4233972
Soft-Label Guided Semi-Supervised Learning for Bi-Ventricle Segmentation in Cardiac Cine MRI
Chapter by: Chang, Qi; Yan, Zhennan; Lou, Yixuan; Axel, Leon; Metaxas, Dimitris N.
in: Proceedings - International Symposium on Biomedical Imaging by
[S.l.] : IEEE Computer Societyhelp@computer.org, 2020
pp. 1752-1755
ISBN: 9781538693308
CID: 4508742
Type I interferon response drives neuroinflammation and synapse loss in Alzheimer disease
Roy, Ethan R; Wang, Baiping; Wan, Ying-Wooi; Chiu, Gabriel; Cole, Allysa; Yin, Zhuoran; Propson, Nicholas E; Xu, Yin; Jankowsky, Joanna L; Liu, Zhandong; Lee, Virginia M-Y; Trojanowski, John Q; Ginsberg, Stephen D; Butovsky, Oleg; Zheng, Hui; Cao, Wei
Type I interferon (IFN) is a key cytokine that curbs viral infection and cell malignancy. Previously, we demonstrated a potent IFN immunogenicity of nucleic acid-containing (NA-containing) amyloid fibrils in the periphery. Here, we investigated whether IFN is associated with β-amyloidosis inside the brain and contributes to neuropathology. An IFN-stimulated gene (ISG) signature was detected in the brains of multiple murine Alzheimer disease (AD) models, a phenomenon also observed in WT mouse brain challenged with generic NA-containing amyloid fibrils. In vitro, microglia innately responded to NA-containing amyloid fibrils. In AD models, activated ISG-expressing microglia exclusively surrounded NA+ amyloid β plaques, which accumulated in an age-dependent manner. Brain administration of rIFN-β resulted in microglial activation and complement C3-dependent synapse elimination in vivo. Conversely, selective IFN receptor blockade effectively diminished the ongoing microgliosis and synapse loss in AD models. Moreover, we detected activated ISG-expressing microglia enveloping NA-containing neuritic plaques in postmortem brains of patients with AD. Gene expression interrogation revealed that IFN pathway was grossly upregulated in clinical AD and significantly correlated with disease severity and complement activation. Therefore, IFN constitutes a pivotal element within the neuroinflammatory network of AD and critically contributes to neuropathogenic processes.
PMCID:7108898
PMID: 31917687
ISSN: 1558-8238
CID: 4386212
Reply: Interactions of interictal epileptic discharges with sleep slow waves and spindles [Letter]
Dahal, Prawesh; Ghani, Naureen; Flinker, Adeen; Dugan, Patricia; Friedman, Daniel; Doyle, Werner; Devinsky, Orrin; Khodagholy, Dion; Gelinas, Jennifer N
PMID: 32211754
ISSN: 1460-2156
CID: 4357922
The role of affibody in aged mouse model of alzheimer's disease [Meeting Abstract]
Greenberg, J H; Lindberg, H; Orozco, J; Vama, B; Habbat, H; Loflom, J; Stahl, S; Mejouate, O; Wisniewski, T; Boutajangout, A
Background: Alzheimer's disease (AD) is a progressive neurodegenerative disease that currently accounts for over 70% of cases of dementia in adults over 65 worldwide, and is the only cause of death among the top ten with no effective treatments. Clinically, AD is characterized by progressive deterioration in memory and other areas of cognitive function. Neuropathologically, the disease is characterized by extracellular aggregations of amyloid-B (AB) and intraneuronal neurofibrillary tangles (NFTS) composed of abnormally phosphorylated tau, causing progressive neuronal death. The aim of this study was to investigate whether the affibody ZSYM73-ABD (a portion of the active antibody molecule) can reverse AD pathology in an AD mouse model, without also causing significant neuroinflammation and/or microhemorrhage.
Method(s): APP/PS1 double transgenic mice were injected twice weekly with either ZSYM-ABD or a non-AB specific affibody, Ztaq2, as a control. Mice underwent behavioral testing and their brains were then sacrificed for immunohistochemistry.
Result(s): Semi-quantitative analysis of amyloid burden, performed using 6E10/4G8 antibodies, showed a statistically significant reduction in amyloid burden in the hippocampus, and a trend towards reduction in amyloid burden in the cortex. Inflammation was assessed using GFAP and Iba1(markers of gliosis) which showed a statistically significant reduction of GFAP in the cortex and in the hippocampus, and a slight reduction of microgliosis in ZSYM73-ABD affibody treated mice. Finally, mice treated with ZSYM73-ABD performed significantly better on a novel object recognition task than control mice, suggesting a correlation between the histological findings above and improvement in cognitive function.
Conclusion(s): In conclusion, this study demonstrates that passive immunization with an affibody molecule improves cognitive function and significantly decreases amyloid burden in the hippocampus of a transgenic mouse model of AD, without inducing inflammation. This has potential implications for treatment of AD in humans
EMBASE:633776658
ISSN: 1532-5415
CID: 4757572
Mixed-conducting particulate composites for soft electronics
Jastrzebska-Perfect, Patricia; Spyropoulos, George D; Cea, Claudia; Zhao, Zifang; Rauhala, Onni J; Viswanathan, Ashwin; Sheth, Sameer A; Gelinas, Jennifer N; Khodagholy, Dion
Bioelectronic devices should optimally merge a soft, biocompatible tissue interface with capacity for local, advanced signal processing. Here, we introduce an organic mixed-conducting particulate composite material (MCP) that can form functional electronic components by varying particle size and density. We created MCP-based high-performance anisotropic films, independently addressable transistors, resistors, and diodes that are pattern free, scalable, and biocompatible. MCP enabled facile and effective electronic bonding between soft and rigid electronics, permitting recording of neurophysiological data at the resolution of individual neurons from freely moving rodents and from the surface of the human brain through a small opening in the skull. We also noninvasively acquired high-spatiotemporal resolution electrophysiological signals by directly interfacing MCP with human skin. MCP provides a single-material solution to facilitate development of bioelectronic devices that can safely acquire, transmit, and process complex biological signals.
PMCID:7182411
PMID: 32494646
ISSN: 2375-2548
CID: 4469172