Searched for: school:SOM
Department/Unit:Neuroscience Institute
A companion to the preclinical common data elements for physiologic data in rodent epilepsy models. A report of the TASK3 Physiology Working Group of the ILAE/AES Joint Translational Task Force
Gorter, Jan A; van Vliet, Erwin A; Dedeurwaerdere, Stefanie; Buchanan, Gordon F; Friedman, Daniel; Borges, Karin; Grabenstatter, Heidi; Lukasiuk, Katarzyna; Scharfman, Helen E; Nehlig, Astrid
The International League Against Epilepsy/American Epilepsy Society (ILAE/AES) Joint Translational Task Force created the TASK3 working groups to create common data elements (CDEs) for various aspects of preclinical epilepsy research studies, which could help improve standardization of experimental designs. This article concerns the parameters that can be measured to assess the physiologic condition of the animals that are used to study rodent models of epilepsy. Here we discuss CDEs for physiologic parameters measured in adult rats and mice such as general health status, temperature, cardiac and respiratory function, and blood constituents. We provide detailed CDE tables and case report forms (CRFs), and with this companion manuscript we discuss the monitoring of different aspects of physiology of the animals. The CDEs, CRFs, and companion paper are available to all researchers, and their use will benefit the harmonization and comparability of translational preclinical epilepsy research. The ultimate hope is to facilitate the development of biomarkers and new treatments for epilepsy.
PMID: 30411072
ISSN: 2470-9239
CID: 3429282
An analytic expression for the ultimate intrinsic SNR in a uniform sphere
Lee, Hong-Hsi; Sodickson, Daniel K; Lattanzi, Riccardo
PURPOSE/OBJECTIVE:The ultimate intrinsic signal-to-noise ratio (UISNR) is normally calculated using electrodynamic simulations with a complete basis of modes. Here, we provide an exact solution for the UISNR at the center of a dielectric sphere and assess how accurately this solution approximates UISNR away from the center. METHODS:We performed a mode analysis to determine which modes contribute to central UISNR - ζ(r→0). We then derived an analytic expression to calculate ζ(r→0) and analyzed its dependence on main magnetic field strength, sample geometry, and electrical properties. We validated the proposed solution against an established method based on dyadic Green's function simulations. RESULTS:Only one divergence-free mode contributes to ζ(r→0). The UISNR given by the exact solution matched the full simulation results for various parameter settings, whereas calculation speed was approximately 1000 times faster. We showed that the analytic expression can approximate the UISNR with <5% error at positions as much as 10-20% of the radius away from the center. CONCLUSION/CONCLUSIONS:The proposed formula enables rapid and direct calculation of UISNR in the central region of a sphere. The resulting UISNR value may be used, for example, as an absolute reference to assess the performance of head coils with spherical phantoms.
PMCID:6107403
PMID: 29682800
ISSN: 1522-2594
CID: 3052972
Patterning the insect eye: From stochastic to deterministic mechanisms
Ebadi, Haleh; Perry, Michael; Short, Keith; Klemm, Konstantin; Desplan, Claude; Stadler, Peter F; Mehta, Anita
While most processes in biology are highly deterministic, stochastic mechanisms are sometimes used to increase cellular diversity. In human and Drosophila eyes, photoreceptors sensitive to different wavelengths of light are distributed in stochastic patterns, and one such patterning system has been analyzed in detail in the Drosophila retina. Interestingly, some species in the dipteran family Dolichopodidae (the "long legged" flies, or "Doli") instead exhibit highly orderly deterministic eye patterns. In these species, alternating columns of ommatidia (unit eyes) produce corneal lenses of different colors. Occasional perturbations in some individuals disrupt the regular columns in a way that suggests that patterning occurs via a posterior-to-anterior signaling relay during development, and that specification follows a local, cellular-automaton-like rule. We hypothesize that the regulatory mechanisms that pattern the eye are largely conserved among flies and that the difference between unordered Drosophila and ordered dolichopodid eyes can be explained in terms of relative strengths of signaling interactions rather than a rewiring of the regulatory network itself. We present a simple stochastic model that is capable of explaining both the stochastic Drosophila eye and the striped pattern of Dolichopodidae eyes and thereby characterize the least number of underlying developmental rules necessary to produce both stochastic and deterministic patterns. We show that only small changes to model parameters are needed to also reproduce intermediate, semi-random patterns observed in another Doli species, and quantification of ommatidial distributions in these eyes suggests that their patterning follows similar rules.
PMCID:6264902
PMID: 30439954
ISSN: 1553-7358
CID: 3859232
Unveiling the Extracellular Space of the Brain: From Super-resolved Microstructure to In Vivo Function
Hrabetova, Sabina; Cognet, Laurent; Rusakov, Dmitri A; Nägerl, U Valentin
The extracellular space occupies approximately one-fifth of brain volume, molding a spider web of gaps filled with interstitial fluid and extracellular matrix where neurons and glial cells perform in concert. Yet, very little is known about the spatial organization and dynamics of the extracellular space, let alone its influence on brain function, owing to a lack of appropriate techniques (and a traditional bias toward the inside of cells, not the spaces in between). At the same time, it is clear that understanding fundamental brain functions, such as synaptic transmission, memory, sleep, and recovery from disease, calls for more focused research on the extracellular space of the brain. This review article highlights several key research areas, covering recent methodological and conceptual progress that illuminates this understudied, yet critically important, brain compartment, providing insights into the opportunities and challenges of this nascent field.
PMID: 30381427
ISSN: 1529-2401
CID: 3399842
Algorithms for Olfactory Search across Species
Baker, Keeley L; Dickinson, Michael; Findley, Teresa M; Gire, David H; Louis, Matthieu; Suver, Marie P; Verhagen, Justus V; Nagel, Katherine I; Smear, Matthew C
Localizing the sources of stimuli is essential. Most organisms cannot eat, mate, or escape without knowing where the relevant stimuli originate. For many, if not most, animals, olfaction plays an essential role in search. While microorganismal chemotaxis is relatively well understood, in larger animals the algorithms and mechanisms of olfactory search remain mysterious. In this symposium, we will present recent advances in our understanding of olfactory search in flies and rodents. Despite their different sizes and behaviors, both species must solve similar problems, including meeting the challenges of turbulent airflow, sampling the environment to optimize olfactory information, and incorporating odor information into broader navigational systems.
PMID: 30381430
ISSN: 1529-2401
CID: 3400862
A Versatile Bis-Allylboron Reagent for the Stereoselective Synthesis of Chiral Diols
Hetzler, Belinda E; Volpin, Giulio; Vignoni, Elisa; Petrovic, Ana G; Proni, Gloria; Hu, Chunhua T; Trauner, Dirk
Allylboron reagents are popular in synthesis owing to their versatility and the predictable stereochemical outcomes of their reactions with carbonyl compounds. Herein, we describe the synthesis of (Z,Z)-hexadienyl bis-boronate 1, a configurationally stable, crystalline, and easy to handle compound, which represents a class of bis-allylic boron reagents with heretofore untapped synthetic potential. In combination with a chiral phosphoric acid catalyst, the reagent can be employed for the enantioselective allyl transfer reaction to a variety of one-pot transformations, enabling swift access to functionalized 1,n-diols. The in situ conversion of the reagent into the corresponding bis-borinic ester allows for the direct and diastereoselective two-fold allyl transfer to aldehydes. This affords C2 - or Ci -symmetric stereotetrads containing a 1,4-diol moiety for natural product synthesis. The usefulness of our method was demonstrated with a short synthesis of the lignan (±)-neo-olivil.
PMID: 30144261
ISSN: 1521-3773
CID: 3320332
Supine plasma NE predicts the pressor response to droxidopa in nOH
Palma, Jose-Alberto; Norcliffe-Kaufmann, Lucy; Martinez, Jose; Kaufmann, Horacio
OBJECTIVE:To test whether the plasma levels of norepinephrine (NE) in patients with neurogenic orthostatic hypotension (nOH) predict their pressor response to droxidopa. METHODS:This was an observational study, which included patients with nOH. All patients had standardized autonomic function testing including determination of venous plasma catecholamine levels drawn through an indwelling catheter while resting supine. This was followed by a droxidopa titration with 100 mg increments in successive days until relief of symptoms, side effects, or the maximum dose of 600 mg was reached. No response was defined as an increase of <10 mm Hg in systolic blood pressure (BP) after 3-minute standing 1 hour after droxidopa administration. Nonlinear regression models were used to determine the relationship between BP response and plasma NE levels. RESULTS:= 0.0023). CONCLUSIONS:In patients with nOH, lower supine resting plasma NE levels are associated with a greater pressor effect of droxidopa treatment. This finding should help identify patients with nOH most likely to respond to standard doses of droxidopa. CLASSIFICATION OF EVIDENCE/METHODS:This study provides Class I evidence that lower supine plasma NE levels accurately identify patients with nOH more likely to have a greater pressor effect from droxidopa.
PMID: 30232253
ISSN: 1526-632x
CID: 3301782
Myosin V functions as a vesicle tether at the plasma membrane to control neurotransmitter release in central synapses
Maschi, Dario; Gramlich, Michael W; Klyachko, Vitaly A
Synaptic vesicle fusion occurs at specialized release sites at the active zone. How refilling of release sites with new vesicles is regulated in central synapses remains poorly understood. Using nanoscale-resolution detection of individual release events in rat hippocampal synapses we found that inhibition of myosin V, the predominant vesicle-associated motor, strongly reduced refilling of the release sites during repetitive stimulation. Single-vesicle tracking revealed that recycling vesicles continuously shuttle between a plasma membrane pool and an inner pool. Vesicle retention at the membrane pool was regulated by neural activity in a myosin V dependent manner. Ultrastructural measurements of vesicle occupancy at the plasma membrane together with analyses of single-vesicle trajectories during vesicle shuttling between the pools suggest that myosin V acts as a vesicle tether at the plasma membrane, rather than a motor transporting vesicles to the release sites, or directly regulating vesicle exocytosis.
PMID: 30320552
ISSN: 2050-084x
CID: 3398932
Neuronal specification in space and time
Holguera, Isabel; Desplan, Claude
To understand how neurons assemble to form functional circuits, it is necessary to obtain a detailed knowledge of their diversity and to define the developmental specification programs that give rise to this diversity. Invertebrates and vertebrates appear to share common developmental principles of neuronal specification in which cascades of transcription factors temporally pattern progenitors, while spatial cues modify the outcomes of this temporal patterning. Here, we highlight these conserved mechanisms and describe how they are used in distinct neural structures. We present the questions that remain for a better understanding of neuronal specification. Single-cell RNA profiling approaches will potentially shed light on these questions, allowing not only the characterization of neuronal diversity in adult brains, but also the investigation of the developmental trajectories leading to the generation and maintenance of this diversity.
PMCID:6368964
PMID: 30309944
ISSN: 1095-9203
CID: 3859222
Sequential Nonlinear Filtering of Local Motion Cues by Global Motion Circuits
Barnhart, Erin L; Wang, Irving E; Wei, Huayi; Desplan, Claude; Clandinin, Thomas R
Many animals guide their movements using optic flow, the displacement of stationary objects across the retina caused by self-motion. How do animals selectively synthesize a global motion pattern from its local motion components? To what extent does this feature selectivity rely on circuit mechanisms versus dendritic processing? Here we used in vivo calcium imaging to identify pre- and postsynaptic mechanisms for processing local motion signals in global motion detection circuits in Drosophila. Lobula plate tangential cells (LPTCs) detect global motion by pooling input from local motion detectors, T4/T5 neurons. We show that T4/T5 neurons suppress responses to adjacent local motion signals whereas LPTC dendrites selectively amplify spatiotemporal sequences of local motion signals consistent with preferred global patterns. We propose that sequential nonlinear suppression and amplification operations allow optic flow circuitry to simultaneously prevent saturating responses to local signals while creating selectivity for global motion patterns critical to behavior.
PMCID:6274635
PMID: 30220510
ISSN: 1097-4199
CID: 3859212