Searched for: school:SOM
Department/Unit:Neuroscience Institute
IgE stimulates human and mouse arterial cell apoptosis and cytokine expression and promotes atherogenesis in Apoe-/- mice
Wang, Jing; Cheng, Xiang; Xiang, Mei-Xiang; Alanne-Kinnunen, Mervi; Wang, Jian-An; Chen, Han; He, Aina; Sun, Xinghui; Lin, Yan; Tang, Ting-Ting; Tu, Xin; Sjöberg, Sara; Sukhova, Galina K; Liao, Yu-Hua; Conrad, Daniel H; Yu, Lunyin; Kawakami, Toshiaki; Kovanen, Petri T; Libby, Peter; Shi, Guo-Ping
PMCID:6205392
PMID: 30382945
ISSN: 1558-8238
CID: 3399912
An analytic expression for the ultimate intrinsic SNR in a uniform sphere
Lee, Hong-Hsi; Sodickson, Daniel K; Lattanzi, Riccardo
PURPOSE/OBJECTIVE:The ultimate intrinsic signal-to-noise ratio (UISNR) is normally calculated using electrodynamic simulations with a complete basis of modes. Here, we provide an exact solution for the UISNR at the center of a dielectric sphere and assess how accurately this solution approximates UISNR away from the center. METHODS:We performed a mode analysis to determine which modes contribute to central UISNR - ζ(r→0). We then derived an analytic expression to calculate ζ(r→0) and analyzed its dependence on main magnetic field strength, sample geometry, and electrical properties. We validated the proposed solution against an established method based on dyadic Green's function simulations. RESULTS:Only one divergence-free mode contributes to ζ(r→0). The UISNR given by the exact solution matched the full simulation results for various parameter settings, whereas calculation speed was approximately 1000 times faster. We showed that the analytic expression can approximate the UISNR with <5% error at positions as much as 10-20% of the radius away from the center. CONCLUSION/CONCLUSIONS:The proposed formula enables rapid and direct calculation of UISNR in the central region of a sphere. The resulting UISNR value may be used, for example, as an absolute reference to assess the performance of head coils with spherical phantoms.
PMCID:6107403
PMID: 29682800
ISSN: 1522-2594
CID: 3052972
The effect of amyloid-β peptide on synaptic plasticity and memory is influenced by different isoforms, concentrations, and aggregation status
Gulisano, Walter; Melone, Marcello; Li Puma, Domenica D; Tropea, Maria Rosaria; Palmeri, Agostino; Arancio, Ottavio; Grassi, Claudio; Conti, Fiorenzo; Puzzo, Daniela
The increase of oligomeric amyloid-beta (oAβ) has been related to synaptic dysfunction, thought to be the earliest event in Alzheimer's disease pathophysiology. Conversely, the suppression of endogenous Aβ impaired synaptic plasticity and memory, suggesting that the peptide is needed in the healthy brain. However, different species, aggregation forms and concentrations of Aβ might differently influence synaptic function/dysfunction. Here, we have tested the contribution of monomeric and oligomeric Aβ42 and Aβ40 at 200 nM and 200 pM concentrations on hippocampal long-term potentiation and spatial memory. We found that, when at 200 nM, oAβ40, oAβ42, and monomeric Aβ42 impaired long-term potentiation and memory, whereas only oAβ42 200 pM enhanced synaptic plasticity and memory and rescued the detrimental effect due to depletion of endogenous Aβ. Interestingly, quantification of monomer-like and oligomer-like species carried out by transmission electron microscopy revealed an increase of the monomer/oligomer ratio in the oAβ42 200 pM preparation, suggesting that the content of monomers and oligomers depends on the final concentration of the solution.
PMID: 30092511
ISSN: 1558-1497
CID: 3372352
Stylus/tablet user input device for MRI heart wall segmentation: efficiency and ease of use
Taslakian, Bedros; Pires, Antonio; Halpern, Dan; Babb, James S; Axel, Leon
OBJECTIVES/OBJECTIVE:To determine whether use of a stylus user input device (UID) would be superior to a mouse for CMR segmentation. METHODS:Twenty-five consecutive clinical cardiac magnetic resonance (CMR) examinations were selected. Image analysis was independently performed by four observers. Manual tracing of left (LV) and right (RV) ventricular endocardial contours was performed twice in 10 randomly assigned sessions, each session using only one UID. Segmentation time and the ventricular function variables were recorded. The mean segmentation time and time reduction were calculated for each method. Intraclass correlation coefficients (ICC) and Bland-Altman plots of function variables were used to assess intra- and interobserver variability and agreement between methods. Observers completed a Likert-type questionnaire. RESULTS:The mean segmentation time (in seconds) was significantly less with the stylus compared to the mouse, averaging 206±108 versus 308±125 (p<0.001) and 225±140 versus 353±162 (p<0.001) for LV and RV segmentation, respectively. The intra- and interobserver agreement rates were excellent (ICC≥0.75) regardless of the UID. There was an excellent agreement between measurements derived from manual segmentation using different UIDs (ICC≥0.75), with few exceptions. Observers preferred the stylus. CONCLUSION/CONCLUSIONS:The study shows a significant reduction in segmentation time using the stylus, a subjective preference, and excellent agreement between the methods. KEY POINTS/CONCLUSIONS:• Using a stylus for MRI ventricular segmentation is faster compared to mouse • A stylus is easier to use and results in less fatigue • There is excellent agreement between stylus and mouse UIDs.
PMID: 29721687
ISSN: 1432-1084
CID: 3056582
Patterning the insect eye: From stochastic to deterministic mechanisms
Ebadi, Haleh; Perry, Michael; Short, Keith; Klemm, Konstantin; Desplan, Claude; Stadler, Peter F; Mehta, Anita
While most processes in biology are highly deterministic, stochastic mechanisms are sometimes used to increase cellular diversity. In human and Drosophila eyes, photoreceptors sensitive to different wavelengths of light are distributed in stochastic patterns, and one such patterning system has been analyzed in detail in the Drosophila retina. Interestingly, some species in the dipteran family Dolichopodidae (the "long legged" flies, or "Doli") instead exhibit highly orderly deterministic eye patterns. In these species, alternating columns of ommatidia (unit eyes) produce corneal lenses of different colors. Occasional perturbations in some individuals disrupt the regular columns in a way that suggests that patterning occurs via a posterior-to-anterior signaling relay during development, and that specification follows a local, cellular-automaton-like rule. We hypothesize that the regulatory mechanisms that pattern the eye are largely conserved among flies and that the difference between unordered Drosophila and ordered dolichopodid eyes can be explained in terms of relative strengths of signaling interactions rather than a rewiring of the regulatory network itself. We present a simple stochastic model that is capable of explaining both the stochastic Drosophila eye and the striped pattern of Dolichopodidae eyes and thereby characterize the least number of underlying developmental rules necessary to produce both stochastic and deterministic patterns. We show that only small changes to model parameters are needed to also reproduce intermediate, semi-random patterns observed in another Doli species, and quantification of ommatidial distributions in these eyes suggests that their patterning follows similar rules.
PMCID:6264902
PMID: 30439954
ISSN: 1553-7358
CID: 3859232
Preclinical common data elements (CDEs) for epilepsy: A joint ILAE/AES and NINDS translational initiative
Scharfman, Helen E; Galanopoulou, Aristea S; French, Jacqueline A; Pitkänen, Asla; Whittemore, Vicky; Harte-Hargrove, Lauren C
PMCID:6210037
PMID: 30450482
ISSN: 2470-9239
CID: 3479272
An Update on the Basic and Clinical Science of Ketamine Analgesia
Doan, Lisa V; Wang, Jing
OBJECTIVE:In the context of the current opioid epidemic, there has been a renewed interest in the use of ketamine as an analgesic agent. METHODS:We have reviewed ketamine analgesia. RESULTS:Ketamine is well-known as an antagonist for N-methyl-D-aspartate receptors. In addition, it can regulate the function of opioid receptors and sodium channels. Ketamine also increases signaling through α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors. These myriad of molecular and cellular mechanisms are responsible for a number of pharmacological functions including pain relief and mood regulation. Clinically, a number of studies have investigated the role of ketamine in the setting of acute and chronic pain, and there is evidence that ketamine can provide analgesia in a variety of pain syndromes. DISCUSSION/CONCLUSIONS:In this review, we have examined basic mechanisms of ketamine and its current clinical use as well as potential novel use in pain management.
PMID: 29927768
ISSN: 1536-5409
CID: 3158292
Hybrid T2 - and T1 -weighted radial acquisition for free-breathing abdominal examination
Benkert, Thomas; Mugler, John P; Rigie, David S; Sodickson, Daniel K; Chandarana, Hersh; Block, Kai Tobias
PURPOSE/OBJECTIVE:-weighted images from a single scan and allows for free-breathing acquisition. THEORY AND METHODS/UNASSIGNED:-weighted gradient-echo (GRE) data. Improved robustness is achieved by extracting a respiratory signal from the GRE data and using it for motion-weighted reconstruction. RESULTS:-weighted Dixon acquisition is possible. CONCLUSION/CONCLUSIONS:-weighted imaging in a single scan. In addition to free-breathing abdominal examination, it promises value for clinical applications that are frequently affected by motion artifacts.
PMCID:6107373
PMID: 29656522
ISSN: 1522-2594
CID: 3042912
Common data elements (CDEs) for preclinical epilepsy research: Introduction to CDEs and description of core CDEs. A TASK3 report of the ILAE/AES joint translational task force
Harte-Hargrove, Lauren C; Galanopoulou, Aristea S; French, Jacqueline A; Pitkänen, Asla; Whittemore, Vicky; Scharfman, Helen E
Common data elements (CDEs) are becoming more common as more areas of preclinical research have generated CDEs. Herein we provide an overview of the progress to date in generating CDEs for preclinical epilepsy research. Currently there are CDEs that have been developed for Physiology (in vivo), Behavior, Pharmacology, and Electroencephalography (EEG). Together the CDEs and methodologic considerations associated with these CDEs are laid out in consecutive manuscripts published in Epilepsia Open, each describing CDEs for their respective topic area. In addition to the overview of progress for the 4 subjects, core characteristics (Core CDEs) are described and explained. Data collection using a case report form (CRF) is described, and considerations that are involved in using the CDEs and CRFs are discussed.
PMID: 30450483
ISSN: 2470-9239
CID: 3479282
A companion to the preclinical common data elements for physiologic data in rodent epilepsy models. A report of the TASK3 Physiology Working Group of the ILAE/AES Joint Translational Task Force
Gorter, Jan A; van Vliet, Erwin A; Dedeurwaerdere, Stefanie; Buchanan, Gordon F; Friedman, Daniel; Borges, Karin; Grabenstatter, Heidi; Lukasiuk, Katarzyna; Scharfman, Helen E; Nehlig, Astrid
The International League Against Epilepsy/American Epilepsy Society (ILAE/AES) Joint Translational Task Force created the TASK3 working groups to create common data elements (CDEs) for various aspects of preclinical epilepsy research studies, which could help improve standardization of experimental designs. This article concerns the parameters that can be measured to assess the physiologic condition of the animals that are used to study rodent models of epilepsy. Here we discuss CDEs for physiologic parameters measured in adult rats and mice such as general health status, temperature, cardiac and respiratory function, and blood constituents. We provide detailed CDE tables and case report forms (CRFs), and with this companion manuscript we discuss the monitoring of different aspects of physiology of the animals. The CDEs, CRFs, and companion paper are available to all researchers, and their use will benefit the harmonization and comparability of translational preclinical epilepsy research. The ultimate hope is to facilitate the development of biomarkers and new treatments for epilepsy.
PMID: 30411072
ISSN: 2470-9239
CID: 3429282