Searched for: Department/Unit:Neuroscience Institute
Multimodal fluorescence-optoacoustic in vivo imaging of the near-infrared calcium ion indicator NIR-GECO2G
Shaykevich, Sarah F; Little, Justin P; Qian, Yong; Paquet, Marie-Eve; Campbell, Robert E; Razansky, Daniel; Shoham, Shy
Measuring whole-brain distributed functional activity is an important unmet need in neuroscience, requiring high temporal resolution and cellular specificity across large volumes. Functional optoacoustic neuro-tomography (FONT) with genetically encoded calcium ion indicators is a promising approach towards this goal. However, it has not yet been applied in the near-infrared (NIR) range that provides deep penetration and low vascular background optimal for in vivo neuroimaging. Here, we study the noninvasive multimodal fluorescence and optoacoustic imaging performance of state-of-the-art NIR calcium ion indicator NIR-GECO2G in the mouse brain. We observe robust in vivo signals with widefield fluorescence, and for the first time, with FONT. We also show that in both modalities, the NIR-GECO2G signal improves more than twofold in the biliverdin-enriched Blvra
PMCID:11732225
PMID: 39811063
ISSN: 2213-5979
CID: 5776742
Towards an Understanding of the Dentate Gyrus Hilus [Historical Article]
Scharfman, Helen E
For many years, the hilus of the dentate gyrus (DG) was a mystery because anatomical data suggested a bewildering array of cells without clear organization. Moreover, some of the anatomical information led to more questions than answers. For example, it had been identified that one of the major cell types in the hilus, the mossy cell, innervates granule cells (GCs). However, mossy cells also targeted local GABAergic neurons. Furthermore, it was not yet clear if mossy cells were glutamatergic or GABAergic. This led to many debates about the role of mossy cells. However, it was clear that hilar neurons, including mossy cells, were likely to have very important functions because they provided strong input to GCs. Hilar neurons also attracted attention in epilepsy because pathological studies showed that hilar neurons were often lost, but GCs remained. Vulnerability of hilar neurons also occurred after traumatic brain injury and ischemia. These observations fueled an interest to understand hilar neurons and protect them, an interest that continues to this day. This article provides a historical and personal perspective into the ways that I sought to contribute to resolving some of the debates and moving the field forward. Despite several technical challenges the outcomes of the studies have been worth the effort with some surprising findings along the way. Given the growing interest in the hilus, and the advent of multiple techniques to selectively manipulate hilar neurons, there is a great opportunity for future research.
PMCID:11673923
PMID: 39721944
ISSN: 1098-1063
CID: 5767562
Chloride reported missing from brain and extracellular matrix is a suspect
Nicholson, Charles
PMID: 39724410
ISSN: 1469-7793
CID: 5767722
WebSEQ: A New Tool for Democratizing Omics Data Sharing
Liddelow, Shane A; Zhang, Ye; Sloan, Steven A
The relative ease of generation and proliferation of omics datasets has moved considerably faster than the effective dissemination of these data to the scientific community. Despite advancements in making raw data publicly available, many researchers struggle with data analysis and integration. We propose sharing analyzed data through user-friendly platforms to enhance accessibility. Here, we present a free, online tool, for sharing basic omics data in a searchable and user-friendly format. Importantly, it requires no coding or prior computational knowledge to build-only a data spreadsheet. Overall, this tool facilitates the exploration of transcriptomic, proteomic, and metabolomics data, which is crucial for understanding glial diversity and function. This initiative underscores the importance of accessible molecular data in advancing neuroscience research.
PMID: 39722526
ISSN: 1098-1136
CID: 5767592
Programmed Cell Death Protein 1 Contributes to Oral Cancer Pain via Regulating Tumor Necrosis Factor Alpha in the Spinal Trigeminal Nucleus Caudalis
Mao, Runyi; Liu, Sufang; Dolan, John C; Schmidt, Brian L; Tao, Feng
BACKGROUND:Oral cancer causes intense pain at the primary site, and such pain can impair oral functions. However, the underlying mechanisms for oral cancer pain are still not fully understood. In the present study, it is investigated whether programmed cell death protein 1 (PD-1) is involved in the development of oral cancer pain. METHODS:RMP1-14, a specific anti-PD-1 antibody, was injected into spinal trigeminal nucleus caudalis (Sp5C) and measured pain behaviors using von Frey filaments and dolognawmeter. Western blotting and immunofluorescence staining were performed to analyze the expression of PD-1 and tumor necrosis factor alpha (TNFα) in the Sp5C. RESULTS:It was observed that the PD-1 antibody significantly inhibited mechanical hypersensitivity and functional allodynia in our oral cancer pain mouse model. Moreover, we found that TNFα was highly upregulated in the Sp5C following the induction of oral cancer pain and that intra-Sp5C injection of the PD-1 antibody diminished the upregulation of TNFα. It was found that genetic deletion of TNFα or its receptor antagonism synergized the analgesic effect of PD-1 antibody on oral cancer pain. CONCLUSION/CONCLUSIONS:Our results suggest that PD-1 in the Sp5C contributes to oral cancer pain by altering TNFα signaling in the trigeminal nociceptive system, and PD-1 could be targeted to develop a novel approach for oral cancer pain management.
PMID: 39660489
ISSN: 1875-6190
CID: 5766032
Advancements in Immunity and Dementia Research: Highlights from the 2023 AAIC Advancements: Immunity Conference
Kloske, Courtney M; Mahinrad, Simin; Barnum, Christopher J; Batista, Andre F; Bradshaw, Elizabeth M; Butts, Brittany; Carrillo, Maria C; Chakrabarty, Paramita; Chen, Xiaoying; Craft, Suzanne; Da Mesquita, Sandro; Dabin, Luke C; Devanand, Davangere; Duran-Laforet, Violeta; Elyaman, Wassim; Evans, Elizabeth E; Fitzgerald-Bocarsly, Patricia; Foley, Kate E; Harms, Ashley S; Heneka, Michael T; Hong, Soyon; Huang, Yu-Wen A; Jackvony, Stephanie; Lai, Laijun; Guen, Yann Le; Lemere, Cynthia A; Liddelow, Shane A; Martin-Peña, Alfonso; Orr, Anna G; Quintana, Francisco J; Ramey, Grace D; Rexach, Jessica E; Rizzo, Stacey J S; Sexton, Claire; Tang, Alice S; Torrellas, Jose G; Tsai, Andy P; van Olst, Lynn; Walker, Keenan A; Wharton, Whitney; Tansey, Malú Gámez; Wilcock, Donna M
The immune system is a key player in the onset and progression of neurodegenerative disorders. While brain resident immune cell-mediated neuroinflammation and peripheral immune cell (eg, T cell) infiltration into the brain have been shown to significantly contribute to Alzheimer's disease (AD) pathology, the nature and extent of immune responses in the brain in the context of AD and related dementias (ADRD) remain unclear. Furthermore, the roles of the peripheral immune system in driving ADRD pathology remain incompletely elucidated. In March of 2023, the Alzheimer's Association convened the Alzheimer's Association International Conference (AAIC), Advancements: Immunity, to discuss the roles of the immune system in ADRD. A wide range of topics were discussed, such as animal models that replicate human pathology, immune-related biomarkers and clinical trials, and lessons from other fields describing immune responses in neurodegeneration. This manuscript presents highlights from the conference and outlines avenues for future research on the roles of immunity in neurodegenerative disorders. HIGHLIGHTS: The immune system plays a central role in the pathogenesis of Alzheimer's disease. The immune system exerts numerous effects throughout the brain on amyloid-beta, tau, and other pathways. The 2023 AAIC, Advancements: Immunity, encouraged discussions and collaborations on understanding the role of the immune system.
PMID: 39692624
ISSN: 1552-5279
CID: 5764492
Author Correction: Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Bonev, Boyan; Castelo-Branco, Gonçalo; Chen, Fei; Codeluppi, Simone; Corces, M Ryan; Fan, Jean; Heiman, Myriam; Harris, Kenneth; Inoue, Fumitaka; Kellis, Manolis; Levine, Ariel; Lotfollahi, Mo; Luo, Chongyuan; Maynard, Kristen R; Nitzan, Mor; Ramani, Vijay; Satijia, Rahul; Schirmer, Lucas; Shen, Yin; Sun, Na; Green, Gilad S; Theis, Fabian; Wang, Xiao; Welch, Joshua D; Gokce, Ozgun; Konopka, Genevieve; Liddelow, Shane; Macosko, Evan; Ali Bayraktar, Omer; Habib, Naomi; Nowakowski, Tomasz J
PMID: 39681663
ISSN: 1546-1726
CID: 5764202
Incremental hemodialysis transition in veterans and nonveterans with kidney failure
Rhee, Connie M; Kovesdy, Csaba P; Unruh, Mark; Crowley, Susan; Geller, David; Goldfarb, David S; Kraut, Jeffrey; Rastegar, Mandana; Rifkin, Ian R; Kalantar-Zadeh, Kamyar
PURPOSE OF REVIEW/OBJECTIVE:Initiation of hemodialysis treatment with a thrice-weekly prescription is currently the standard of care irrespective of patients' residual kidney function (RKF), comorbidities, and preferences. RECENT FINDINGS/RESULTS:Each year ∼12 000 Veterans with advanced kidney disease progress to end-stage kidney disease (ESKD) requiring dialysis and comprise greater than 10% of the US incident ESKD population. Dialysis is costly and is associated with impaired health-related quality of life (HRQOL) and high mortality risk, especially in the first year of treatment. Evidence suggests an incremental dialysis transition using twice-weekly hemodialysis provides various benefits, including more dialysis-free time, longer RKF preservation, less vascular access damage, and lower patient burden. Pragmatic studies are needed to inform the efficacy and safety of incremental hemodialysis as a personalized dialysis regimen, and could inform its consideration as a conservation strategy during times of supply shortages. Broadly implementing twice-weekly hemodialysis could also potentially allow more Veterans to receive care within VA-based dialysis units. The VA IncHVets Trial is a pragmatic, multicenter, randomized controlled trial comparing the efficacy and safety of twice-weekly incremental vs. thrice-weekly hemodialysis among Veterans transitioning to ESKD. SUMMARY/CONCLUSIONS:Further research is needed to determine whether incremental hemodialysis is well tolerated, effective, and facilitates a more favorable transition to dialysis.
PMID: 39611277
ISSN: 1473-6543
CID: 5763612
Inositol 1,4,5-Trisphosphate Receptor 1 Gain-of-Function Increases the Risk for Cardiac Arrhythmias in Mice and Humans
Sun, Bo; Ni, Mingke; Li, Yanhui; Song, Zhenpeng; Wang, Hui; Zhu, Hai-Lei; Wei, Jinhong; Belke, Darrell; Cai, Shitian; Guo, Wenting; Yao, Jinjing; Tian, Shanshan; Estillore, John Paul; Wang, Ruiwu; Sondergaard, Mads Toft; Brohus, Malene; Rohde, Palle Duun; Mu, Yongxin; Vallmitjana, Alexander; Benitez, Raul; Hove-Madsen, Leif; Overgaard, Michael Toft; Fishman, Glenn I; Chen, Ju; Sanatani, Shubhayan; Wilde, Arthur A M; Fill, Michael; Ramos-Franco, Josefina; Nyegaard, Mette; Chen, S R Wayne
BACKGROUND/UNASSIGNED:handling and arrhythmia susceptibility. METHODS/UNASSIGNED:There are a large number of rare ITPR1 missense variants reported in open data repositories. Based on their locations in the ITPR1 channel structure, we selected and characterized 33 human ITPR1 missense variants from open databases and identified 21 human ITPR1 GOF variants. We generated a mouse model carrying a human ITPR1 GOF variant, ITPR1-W1457G (W1447G in mice). RESULTS/UNASSIGNED:release, delayed afterdepolarization, and triggered activity in Purkinje cells. To assess the potential role of ITPR1 variants in arrhythmia susceptibility in humans, we looked up a gene-based association study in the UK Biobank data set and identified 7 rare ITPR1 missense variants showing potential association with cardiac arrhythmias. Remarkably, in vitro functional characterization revealed that all these 7 ITPR1 variants resulted in GOF. CONCLUSIONS/UNASSIGNED:Our studies in mice and humans reveal that enhanced function of ITPR1, a well-known movement disorder gene, increases the risk for cardiac arrhythmias.
PMID: 39655431
ISSN: 1524-4539
CID: 5762482
Field EPSPs of Dentate Gyrus Granule Cells Studied by Selective Optogenetic Activation of Hilar Mossy Cells in Hippocampal Slices
Bernstein, Hannah L; Lu, Yi-Ling; Botterill, Justin J; Duffy, Áine M; LaFrancois, John J; Scharfman, Helen E
Glutamatergic dentate gyrus (DG) mossy cells (MCs) innervate the primary DG cell type, granule cells (GCs). Numerous MC synapses are on GC proximal dendrites in the inner molecular layer (IML). However, field recordings of the GC excitatory postsynaptic potential (fEPSPs) have not been used to study this pathway selectively. Here we describe methods to selectively activate MC axons in the IML using mice with Cre recombinase expressed in MCs. Slices were made after injecting adeno-associated virus (AAV) encoding channelrhodopsin (ChR2) in the DG. In these slices, we show that fEPSPs could be recorded reliably in the IML in response to optogenetic stimulation of MC axons. Furthermore, fEPSPs were widespread across the septotemporal axis. However, fEPSPs were relatively weak because they were small in amplitude and did not elicit a significant population spike in GCs. They also showed little paired pulse facilitation. We confirmed the extracellular findings with patch clamp recordings of GCs despite different recording chambers and other differences in methods. Together the results provide a simple method for studying MC activation of GCs and add to the evidence that this input is normally weak but widespread across the GC population.
PMID: 39665517
ISSN: 1098-1063
CID: 5762862