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366


Stability Analysis of Lamina Cribrosa Structure in Repeated Optical Coherence Tomography Scans [Meeting Abstract]

Fishbaugh, James; Hong, Sungmin; Ishikawa, Hiroshi; Ravier, Mathilde; Wollstein, Gadi; Schuman, Joel S.; Gerig, Guido
ISI:000442912506101
ISSN: 0146-0404
CID: 3333502

Fully convolutional structured LSTM networks for joint 4D medical image segmentation

Chapter by: Gao, Yang; Phillips, Jeff M.; Zheng, Yan; Min, Renqiang; Fletcher, P. Thomas; Gerig, Guido
in: Proceedings - International Symposium on Biomedical Imaging by
[S.l.] : IEEE Computer Societyhelp@computer.org, 2018
pp. 1104-1108
ISBN: 9781538636367
CID: 3993252

Development of White Matter Circuitry in Infants With Fragile X Syndrome

Swanson, Meghan R; Wolff, Jason J; Shen, Mark D; Styner, Martin; Estes, Annette; Gerig, Guido; McKinstry, Robert C; Botteron, Kelly N; Piven, Joseph; Hazlett, Heather C
Importance:Fragile X syndrome (FXS) is a genetic neurodevelopmental disorder and the most common inherited cause of intellectual disability in males. However, there are no published data on brain development in children with FXS during infancy. Objective:To characterize the development of white matter at ages 6, 12, and 24 months in infants with FXS compared with that of typically developing controls. Design, Setting, and Participants:Longitudinal behavioral and brain imaging data were collected at 1 or more time points from 27 infants with FXS and 73 typically developing controls between August 1, 2008, and June 14, 2016, at 2 academic medical centers. Infants in the control group had no first- or second-degree relatives with intellectual or psychiatric disorders, including FXS and autism spectrum disorder. Main Outcomes and Measures:Nineteen major white matter pathways were defined in common atlas space based on anatomically informed methods. Diffusion parameters, including fractional anisotropy, were compared between groups using linear mixed effects modeling. Fiber pathways showing group differences were subsequently examined in association with direct measures of verbal and nonverbal development. Results:There were significant differences in the development of 12 of 19 fiber tracts between the 27 infants with FXS (22 boys and 5 girls) and the 73 infants in the control group (46 boys and 27 girls), with lower fractional anisotropy in bilateral subcortical-frontal, occipital-temporal, temporal-frontal, and cerebellar-thalamic pathways, as well as 4 of 6 subdivisions of the corpus callosum. For all 12 of these pathways, there were significant main effects between groups but not for the interaction of age × group, indicating that lower fractional anisotropy was present and stable from age 6 months in infants with FXS. Lower fractional anisotropy values in the uncinate fasciculi were correlated with lower nonverbal developmental quotient in the FXS group (left uncinate, F = 10.06; false discovery rate-corrected P = .03; right uncinate, F = 21.8; P = .004). Conclusions and Relevance:The results substantiate in human infants the essential role of fragile X gene expression in the early development of white matter. The findings also suggest that the neurodevelopmental effects of FXS are well established at 6 months of age.
PMCID:6026861
PMID: 29617515
ISSN: 2168-6238
CID: 4942402

ESTIMATING SHAPE CORRESPONDENCE FOR POPULATIONS OF OBJECTS WITH COMPLEX TOPOLOGY

Fishbaugh, James; Pascal, Laura; Fischer, Luke; Nguyen, Tung; Boen, Celso; Goncalves, Joao; Gerig, Guido; Paniagua, Beatriz
Statistical shape analysis captures the geometric properties of a given set of shapes, obtained from medical images, by means of statistical methods. Orthognathic surgery is a type of craniofacial surgery that is aimed at correcting severe skeletal deformities in the mandible and maxilla. Methods assuming spherical topology cannot represent the class of anatomical structures exhibiting complex geometries and topologies, including the mandible. In this paper we propose methodology based on non-rigid deformations of 3D geometries to be applied to objects with thin, complex structures. We are able to accurately and quantitatively characterize bone healing at the osteotomy site as well as condylar remodeling for three orthognathic surgery cases, demonstrating the effectiveness of the proposed methodology.
PMCID:6027655
PMID: 29973974
ISSN: 1945-7928
CID: 3185692

4D CONTINUOUS MEDIAL REPRESENTATION BY GEODESIC SHAPE REGRESSION

Hong, Sungmin; Fishbaugh, James; Gerig, Guido
Longitudinal shape analysis has shown great potential to model anatomical processes from baseline to follow-up observations. Shape regression estimates a continuous trajectory of time-discrete anatomical shapes to quantify temporal changes. The need for shape alignment and point-to-point correspondences represent limitations of current shape analysis methodologies, and present significant challenges in shape evaluation. We propose a method that estimates a continuous trajectory of continuous medial representations (CM-Rep) from a set of time-discrete observed shapes. To avoid the traditional step of aligning individual objects, shape changes are modeled via diffeomorphic ambient space deformations. Using a medial shape representation, we separately capture object pose changes and intrinsic geometry changes. Tests and validation with synthetic and real anatomical shapes demonstrate that the new method captures extrinsic shape changes as well as intrinsic shape changes encoded with CM-Reps, a highly relevant property for studying growth and disease processes.
PMCID:6027751
PMID: 29973975
ISSN: 1945-7928
CID: 3185702

Walking, Gross Motor Development, and Brain Functional Connectivity in Infants and Toddlers

Marrus, Natasha; Eggebrecht, Adam T; Todorov, Alexandre; Elison, Jed T; Wolff, Jason J; Cole, Lyndsey; Gao, Wei; Pandey, Juhi; Shen, Mark D; Swanson, Meghan R; Emerson, Robert W; Klohr, Cheryl L; Adams, Chloe M; Estes, Annette M; Zwaigenbaum, Lonnie; Botteron, Kelly N; McKinstry, Robert C; Constantino, John N; Evans, Alan C; Hazlett, Heather C; Dager, Stephen R; Paterson, Sarah J; Schultz, Robert T; Styner, Martin A; Gerig, Guido; Schlaggar, Bradley L; Piven, Joseph; Pruett, John R Jr
Infant gross motor development is vital to adaptive function and predictive of both cognitive outcomes and neurodevelopmental disorders. However, little is known about neural systems underlying the emergence of walking and general gross motor abilities. Using resting state fcMRI, we identified functional brain networks associated with walking and gross motor scores in a mixed cross-sectional and longitudinal cohort of infants at high and low risk for autism spectrum disorder, who represent a dimensionally distributed range of motor function. At age 12 months, functional connectivity of motor and default mode networks was correlated with walking, whereas dorsal attention and posterior cingulo-opercular networks were implicated at age 24 months. Analyses of general gross motor function also revealed involvement of motor and default mode networks at 12 and 24 months, with dorsal attention, cingulo-opercular, frontoparietal, and subcortical networks additionally implicated at 24 months. These findings suggest that changes in network-level brain-behavior relationships underlie the emergence and consolidation of walking and gross motor abilities in the toddler period. This initial description of network substrates of early gross motor development may inform hypotheses regarding neural systems contributing to typical and atypical motor outcomes, as well as neurodevelopmental disorders associated with motor dysfunction.
PMCID:6057546
PMID: 29186388
ISSN: 1460-2199
CID: 2798442

A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images

Chapter by: Mostapha, Mahmoud; Shen, Mark D.; Kim, Sunhyung; Swanson, Meghan; Collins, D. Louis; Fonov, Vladimir; Gerig, Guido; Piven, Joseph; Styner, Martin A.
in: Progress in Biomedical Optics and Imaging - Proceedings of SPIE by
[S.l.] : SPIEspie@spie.org, 2018
pp. ?-?
ISBN: 9781510616370
CID: 4942312

4D Continuous Medial Representation Trajectory Estimation for Longitudinal Shape Analysis

Hong, S; Fishbaugh, J; Gerig, G
Morphological change of anatomy over time has been of great interest for tracking disease progression, aging, and growth. Shape regression methods have shown great success to model the shape changes over time to create a smooth and representative shape trajectory of sparsely scanned medical images. Shape changes modeled by shape regression methods can be affected by pose changes of shapes caused by neighboring anatomies. Such pose changes can cause informative local shape changes to be obscured and neglected in longitudinal shape analysis. In this paper, we propose a method that estimates a continuous trajectory of medial surfaces with correspondence over time to track longitudinal pose changes and local thickness changes separately. A spatiotemporally continuous medial surface trajectory is estimated by integrating velocity fields from a series of continuous medial representations individually estimated for each shape in a continuous 3D shape trajectory. The proposed method enables straightforward analysis on continuous local thickness changes and pose changes of a continuous multi-object shape trajectory. Longitudinal shape analysis which makes use of correspondence and temporal coherence of the estimated continuous medial surface trajectory is demonstrated with experiments on synthetic examples and real anatomical shape complexes
SCOPUS:85057431716
ISSN: 0302-9743
CID: 3566362

Increased Extra-axial Cerebrospinal Fluid in High-Risk Infants Who Later Develop Autism

Shen, Mark D; Kim, Sun Hyung; McKinstry, Robert C; Gu, Hongbin; Hazlett, Heather C; Nordahl, Christine W; Emerson, Robert W; Shaw, Dennis; Elison, Jed T; Swanson, Meghan R; Fonov, Vladimir S; Gerig, Guido; Dager, Stephen R; Botteron, Kelly N; Paterson, Sarah; Schultz, Robert T; Evans, Alan C; Estes, Annette M; Zwaigenbaum, Lonnie; Styner, Martin A; Amaral, David G; Piven, Joseph; Piven, J; Hazlett, H C; Chappell, C; Dager, S; Estes, A; Shaw, D; Botteron, K; McKinstry, R; Constantino, J; Pruett, J; Schultz, R; Zwaigenbaum, L; Elison, J; Evans, A C; Collins, D L; Pike, G B; Fonov, V; Kostopoulos, P; Das, S; Gerig, G; Styner, M; Gu, H
BACKGROUND: We previously reported that infants who developed autism spectrum disorder (ASD) had increased cerebrospinal fluid (CSF) in the subarachnoid space (i.e., extra-axial CSF) from 6 to 24 months of age. We attempted to confirm and extend this finding in a larger independent sample. METHODS: A longitudinal magnetic resonance imaging study of infants at risk for ASD was carried out on 343 infants, who underwent neuroimaging at 6, 12, and 24 months. Of these infants, 221 were at high risk for ASD because of an older sibling with ASD, and 122 were at low risk with no family history of ASD. A total of 47 infants were diagnosed with ASD at 24 months and were compared with 174 high-risk and 122 low-risk infants without ASD. RESULTS: Infants who developed ASD had significantly greater extra-axial CSF volume at 6 months compared with both comparison groups without ASD (18% greater than high-risk infants without ASD; Cohen's d = 0.54). Extra-axial CSF volume remained elevated through 24 months (d = 0.46). Infants with more severe autism symptoms had an even greater volume of extra-axial CSF from 6 to 24 months (24% greater at 6 months, d = 0.70; 15% greater at 24 months, d = 0.70). Extra-axial CSF volume at 6 months predicted which high-risk infants would be diagnosed with ASD at 24 months with an overall accuracy of 69% and corresponding 66% sensitivity and 68% specificity, which was fully cross-validated in a separate sample. CONCLUSIONS: This study confirms and extends previous findings that increased extra-axial CSF is detectable at 6 months in high-risk infants who develop ASD. Future studies will address whether this anomaly is a contributing factor to the etiology of ASD or an early risk marker for ASD.
PMCID:5531051
PMID: 28392081
ISSN: 1873-2402
CID: 2547072

The Emergence of Network Inefficiencies in Infants With Autism Spectrum Disorder

Lewis, John D; Evans, Alan C; Pruett, John R Jr; Botteron, Kelly N; McKinstry, Robert C; Zwaigenbaum, Lonnie; Estes, Annette; Collins, D Louis; Kostopoulos, Penelope; Gerig, Guido; Dager, Stephen; Paterson, Sarah; Schultz, Robert T; Styner, Martin; Hazlett, Heather; Piven, Joseph
BACKGROUND: Autism spectrum disorder (ASD) is a developmental disorder defined by behavioral features that emerge during the first years of life. Research indicates that abnormalities in brain connectivity are associated with these behavioral features. However, the inclusion of individuals past the age of onset of the defining behaviors complicates interpretation of the observed abnormalities: they may be cascade effects of earlier neuropathology and behavioral abnormalities. Our recent study of network efficiency in a cohort of 24-month-olds at high and low familial risk for ASD reduced this confound; we reported reduced network efficiencies in toddlers classified with ASD. The current study maps the emergence of these inefficiencies in the first year of life. METHODS: This study uses data from 260 infants at 6 and 12 months of age, including 116 infants with longitudinal data. As in our earlier study, we use diffusion data to obtain measures of the length and strength of connections between brain regions to compute network efficiency. We assess group differences in efficiency within linear mixed-effects models determined by the Akaike information criterion. RESULTS: Inefficiencies in high-risk infants later classified with ASD were detected from 6 months onward in regions involved in low-level sensory processing. In addition, within the high-risk infants, these inefficiencies predicted 24-month symptom severity. CONCLUSIONS: These results suggest that infants with ASD, even before 6 months of age, have deficits in connectivity related to low-level processing, which contribute to a developmental cascade affecting brain organization and eventually higher-level cognitive processes and social behavior.
PMCID:5524449
PMID: 28460842
ISSN: 1873-2402
CID: 2547082