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Semiautomated ROI analysis in dynamic MR studies. Part I: Image analysis tools for automatic correction of organ displacements

Gerig, G; Kikinis, R; Kuoni, W; von Schulthess, G K; Kubler, O
The most important problem in the analysis of time sequences is the compensation for artifactual motion. Owing to motion, medical images of the abdominal region do not represent organs with fixed configuration. Analysis of organ function with dynamic contrast medium studies using regions of interest (ROIs) is thus not readily accomplished. Images of the organ of interest need to be registered and corrected prior to a detailed local analysis. We have developed an image analysis scheme that allows the automatic detection of the organ contours, the extraction of the motion parameters per frame, and the registration of images. The complete procedure requires only minimal user interaction and results in a readjusted image sequence, where organs of interest remain fixed. Both a visual analysis of the dynamic behavior of functional properties and a quantitative statistical analysis of signal intensity versus time within local ROIs are considerably facilitated using the corrected series.
PMID: 1885789
ISSN: 0363-8715
CID: 1781902

Semiautomated ROI analysis in dynamic MR studies. Part II: Application to renal function examination

von Schulthess, G K; Kuoni, W; Gerig, G; Wuthrich, R; Duewell, S; Krestin, G
Fast MR techniques and the application of water-soluble contrast agents allow the simultaneous examination of renal morphology and the functional aspects of glomerular filtration using bolus injections of Gd-DTPA. Spatial resolution is sufficient to resolve individual renal pyramids, but the quantitative examination of regions of interest (ROIs) is severely impeded by organ movements due to variations of the end-inspiratory position. A new image-processing scheme has been used and tested in 23 normal volunteers and patients. This scheme replaces a tedious frame-by-frame ROI analysis by positional correction of renal regions of all frames of the sequence such that the definition of the regions has to be performed only once. The signal intensities (SIs) of the local regions in each frame are used to compute statistics and to generate curves representing local temporal SI changes due to contrast agent excretion. The success rate of the procedure depends largely on the image quality and on the adherence to a proved acquisition protocol. The present article shows that the combination of MR and robust and reliable image-processing methods can be important for the highly automated analysis of a large number of images acquired as dynamic studies.
PMID: 1885790
ISSN: 0363-8715
CID: 1781912

3D surface rendered MR images of the brain and its vasculature

Cline, H E; Lorensen, W E; Souza, S P; Jolesz, F A; Kikinis, R; Gerig, G; Kennedy, T E
Both time-of-flight and phase contrast magnetic resonance angiography images are combined with stationary tissue images to provide data depicting two contrast relationships yielding intrinsic discrimination of brain matter and flowing blood. A computer analysis is based on nearest neighbor segmentation and the connection between anatomical structures to partition the images into different tissue categories: from which, high resolution brain parenchymal and vascular surfaces are constructed and rendered in juxtaposition, aiding in surgical planning.
PMID: 2002124
ISSN: 0363-8715
CID: 1781962

AUTOMATING SEGMENTATION OF DUAL-ECHO MR HEAD DATA [Meeting Abstract]

GERIG, G; MARTIN, J; KIKINIS, R; KUBLER, O; SHENTON, M; JOLESZ, FA; COLCHESTER, ACF; HAWKES, DJ
ISI:A1991BT82E00015
ISSN: 1011-2499
CID: 1782662

COMPUTER-ANALYSIS OF 3-D MEDICAL IMAGES

KUBLER, O; GERIG, G
ISI:A1991FK41700001
ISSN: 0302-2528
CID: 1783242

Symbolic description of complex 3D objects from medical volume data

Cheng, X.; Gerig, G.
INSPEC:4149357
ISSN: n/a
CID: 1783742

Segmentation of dual-echo MR head data

Gerig, G.; Martin, J.; Kikinis, R.; Kubler, O.
INSPEC:4149363
ISSN: n/a
CID: 1783752

Automatic construction of iso-surfaces from volume data

Wallin, A.; Gerig, G.
INSPEC:3986069
ISSN: n/a
CID: 1783762

Segmentation of 3D magnetic resonance data

Gerig, G.; Kikinis, R.
INSPEC:3668201
ISSN: n/a
CID: 1783772

Extraction of boundary key-points and completion of simple figures

Heitger, F.; Gerig, G.; Rosenthaler, L.; Kubler, O.
INSPEC:3524358
ISSN: n/a
CID: 1783782