Try a new search

Format these results:

Searched for:

person:ark3

Total Results:

149


Oncogenes overexpressed in metastatic oral cancers from patients with pain: potential pain mediators released in exosomes

Bhattacharya, Aditi; Janal, Malvin N; Veeramachaneni, Ratna; Dolgalev, Igor; Dubeykovskaya, Zinaida; Tu, Nguyen Huu; Kim, Hyesung; Zhang, Susanna; Wu, Angie K; Hagiwara, Mari; Kerr, A Ross; DeLacure, Mark D; Schmidt, Brian L; Albertson, Donna G
Oral cancer patients experience pain at the site of the primary cancer. Patients with metastatic oral cancers report greater pain. Lack of pain identifies patients at low risk of metastasis with sensitivity = 0.94 and negative predictive value = 0.89. In the same cohort, sensitivity and negative predictive value of depth of invasion, currently the best predictor, were 0.95 and 0.92, respectively. Cancer pain is attributed to cancer-derived mediators that sensitize neurons and is associated with increased neuronal density. We hypothesized that pain mediators would be overexpressed in metastatic cancers from patients reporting high pain. We identified 40 genes overexpressed in metastatic cancers from patients reporting high pain (n=5) compared to N0 cancers (n=10) and normal tissue (n=5). The genes are enriched for functions in extracellular matrix organization and angiogenesis. They have oncogenic and neuronal functions and are reported in exosomes. Hierarchical clustering according to expression of neurotrophic and axon guidance genes also separated cancers according to pain and nodal status. Depletion of exosomes from cancer cell line supernatant reduced nociceptive behavior in a paw withdrawal assay, supporting a role for exosomes in cancer pain. The identified genes and exosomes are potential therapeutic targets for stopping cancer and attenuating pain.
PMID: 32895418
ISSN: 2045-2322
CID: 4588822

Automated Detection and Classification of Oral Lesions Using Deep Learning for Early Detection of Oral Cancer

Welikala, Roshan Alex; Remagnino, Paolo; Lim, Jian Han; Chan, Chee Seng; Rajendran, Senthilmani; Kallarakkal, Thomas George; Zain, Rosnah Binti; Jayasinghe, Ruwan Duminda; Rimal, Jyotsna; Kerr, Alexander Ross; Amtha, Rahmi; Patil, Karthikeya; Tilakaratne, Wanninayake Mudiyanselage; Gibson, John; Cheong, Sok Ching; Barman, Sarah Ann
ISI:000554372800001
ISSN: 2169-3536
CID: 4560332

Cues used by dentists in the early detection of oral cancer and oral potentially malignant lesions: findings from the National Dental Practice-Based Research Network

Kerr, Alexander Ross; Robinson, Michael E; Meyerowitz, Cyril; Morse, Douglas E; Aguilar, Maria L; Tomar, Scott L; Guerrero, Lisa; Caprio, Dianne; Kaste, Linda M; Makhija, Sonia K; Mungia, Rahma; Rasubala, Linda; Psoter, Walter J
OBJECTIVE:The aim of this study was to assess the influence of clinical cues on risk assessment of cancer-associated mucosal abnormalities. STUDY DESIGN/METHODS:We differentiated lesions with a low risk from those with a high risk for premalignancy or malignancy by using 4 cues: (1) color, (2) location, (3) induration, and (4) pain on exploration. Combinations of color and location were presented through 8 photographs, with induration and pain status variably presented in the standardized history and physical findings. This created 16 clinical scenarios (vignettes) that were permutations of the 4 cues. Three questions assessed the extent to which each cue was used in obtaining a clinical impression as to whether a lesion was benign, premalignant, or malignant. RESULTS:Completed vignette questionnaires were obtained from 130 of 228 invited dentists, (two-thirds males; 79% white; mean age 52 years; average weekly hours of practice 33 hours). Only 40% of the responding dentists had statistically significant decision policies to assign a clinical diagnosis of a lesion as benign, premalignant, or malignant. Lesion location and color were the 2 dominant cues. As a cue, induration was used as a cue by more of the respondents in determining a clinical diagnosis of malignancy, and pain was infrequently used as a cue. CONCLUSIONS:Many dentists do not to have a decision strategy for the clinical diagnosis and risk stratification of oral potentially malignant lesions.
PMID: 32561250
ISSN: 2212-4411
CID: 4492512

How Can Dental Practitioners Join the Fight Against HPV-Associated Oropharyngeal Cancer?

Dillenberg, Jack; Kerr, A Ross; Koskan, Alexis; Patel, Seena; Duong, Mai-Ly
PMID: 32017590
ISSN: 2158-1797
CID: 4301062

Point-of-care oral cytology tool for the screening and assessment of potentially malignant oral lesions

McRae, Michael P; Modak, Sayli S; Simmons, Glennon W; Trochesset, Denise A; Kerr, A Ross; Thornhill, Martin H; Redding, Spencer W; Vigneswaran, Nadarajah; Kang, Stella K; Christodoulides, Nicolaos J; Murdoch, Craig; Dietl, Steven J; Markham, Roger; McDevitt, John T
BACKGROUND:The effective detection and monitoring of potentially malignant oral lesions (PMOL) are critical to identifying early-stage cancer and improving outcomes. In the current study, the authors described cytopathology tools, including machine learning algorithms, clinical algorithms, and test reports developed to assist pathologists and clinicians with PMOL evaluation. METHODS:Data were acquired from a multisite clinical validation study of 999 subjects with PMOLs and oral squamous cell carcinoma (OSCC) using a cytology-on-a-chip approach. A machine learning model was trained to recognize and quantify the distributions of 4 cell phenotypes. A least absolute shrinkage and selection operator (lasso) logistic regression model was trained to distinguish PMOLs and cancer across a spectrum of histopathologic diagnoses ranging from benign, to increasing grades of oral epithelial dysplasia (OED), to OSCC using demographics, lesion characteristics, and cell phenotypes. Cytopathology software was developed to assist pathologists in reviewing brush cytology test results, including high-content cell analyses, data visualization tools, and results reporting. RESULTS:Cell phenotypes were determined accurately through an automated cytological assay and machine learning approach (99.3% accuracy). Significant differences in cell phenotype distributions across diagnostic categories were found in 3 phenotypes (type 1 ["mature squamous"], type 2 ["small round"], and type 3 ["leukocytes"]). The clinical algorithms resulted in acceptable performance characteristics (area under the curve of 0.81 for benign vs mild dysplasia and 0.95 for benign vs malignancy). CONCLUSIONS:These new cytopathology tools represent a practical solution for rapid PMOL assessment, with the potential to facilitate screening and longitudinal monitoring in primary, secondary, and tertiary clinical care settings.
PMID: 32032477
ISSN: 1934-6638
CID: 4300912

Oral submucous fibrosis: a contemporary narrative review with a proposed inter-professional approach for an early diagnosis and clinical management

Rao, Naman R; Villa, Alessandro; More, Chandramani B; Jayasinghe, Ruwan D; Kerr, Alexander Ross; Johnson, Newell W
Oral Submucous fibrosis (OSMF) has traditionally been described as "a chronic, insidious, scarring disease of the oral cavity, often with involvement of the pharynx and the upper esophagus". Millions of individuals are affected, especially in South and South East Asian countries. The main risk factor is areca nut chewing. Due to its high morbidity and high malignant transformation rate, constant efforts have been made to develop effective management. Despite this, there have been no significant improvements in prognosis for decades. This expert opinion paper updates the literature and provides a critique of diagnostic and therapeutic pitfalls common in developing countries and of deficiencies in management. An inter-professional model is proposed to avoid these pitfalls and to reduce these deficiencies.
PMCID:6951010
PMID: 31915073
ISSN: 1916-0216
CID: 4256992

World Workshop on Oral Medicine VII: Clinical evidence of differential expression of lncRNAs in oral squamous cell carcinoma: A scoping review

Pentenero, Monica; Bowers, Leah M; Jayasinghe, Ruwan; Yap, Tami; Cheong, Sok Ching; Kerr, Alexander Ross; Farah, Camile S; Alevizos, Ilias
BACKGROUND:Long non-coding RNAs (lncRNAs) have important roles in regulating gene expression pertaining to cell proliferation, survival, migration and genomic stability. Dysregulated expression of lncRNAs is implicated in cancer initiation, progression and metastasis. OBJECTIVES/OBJECTIVE:To explore, map and summarize the extent of evidence from clinical studies investigating the differential expression of lncRNAs in oral/tongue squamous cell carcinoma. METHODS:PubMed, Scopus and Web of Science were used as search engines. Clinical, full-length, English language studies were included. PRISMA-ScR protocol was used to evaluate and present results. The present scoping review summarizes relationships of the differential expression of lncRNAs with the presence of tumour and with clinicopathological features including survival. RESULTS:Almost half of the investigated transcripts have been explored in more than one study, yet not always with consistent results. The collected data were also compared to the limited studies investigating oral epithelial dysplasia. Data are not easily comparable, first because of different methods used to define what differential expression is, and second because only a limited number of studies performed multivariate analyses to identify clinicopathological features associated with the differentially expressed lncRNAs. CONCLUSIONS:Standard methods and more appropriate data analyses are needed in order to achieve reliable results from future studies.
PMCID:6544174
PMID: 31140697
ISSN: 1601-0825
CID: 4000182

World Workshop on Oral Medicine VII: Editorial [Editorial]

Kerr, Alexander Ross; Greenberg, Martin S; Hodgson, Tim; Jensen, Siri Beier; Lockhart, Peter B; Lodi, Giovanni; Peterson, Douglas E
PMID: 31140695
ISSN: 1601-0825
CID: 3927062

World Workshop on Oral Medicine VII: What participants perceive as important

Brailo, Vlaho; McKnight, Patrick; Kerr, Alexander R; Lodi, Giovanni; Lockhart, Peter B
Our objective was to identify which aspects of World Workshop on Oral Medicine (WWOM) participation were perceived as significant for participants' professional development. Online survey was sent to previous WWOM participants. Qualitative analysis of participants' responses to an open-ended question was performed. Fifty-two WWOM participants responded. Nearly three quarters of respondents (72.3%) felt that participation in the WWOM helped their career. A high percentage of respondents (67.3%) provided answers that fell under the domains of international collaboration, followed by personal academic benefits (48%). Overall, the results indicate that WWOM participation played an important role in individual's professional development. We identified aspects of WWOM involvement that the participants perceived as important. This information will be used for the development of an objective instrument for measuring impact of WWOM on participant's professional path.
PMID: 31140692
ISSN: 1601-0825
CID: 3925742

World Workshop on Oral Medicine VII: Functional pathways involving differentially expressed lncRNAs in oral squamous cell carcinoma

Pentenero, Monica; Bowers, Leah; Jayasinghe, Ruwan; Cheong, Sok Ching; Farah, Camile S; Kerr, Alexander Ross; Alevizos, Ilias
Long non-coding RNAs (lncRNA) modulate gene expression at the epigenetic, transcriptional and post-transcriptional levels and are involved in tumorigenesis. They can form complex secondary and tertiary structures and have been shown to act as precursors, enhancers, reservoirs and decoys in the complex endogenous RNA network. They were first reported in relation to oral squamous cell carcinoma (OSCC) in 2013. Here, we summarise the functional roles and pathways of the most commonly studied lncRNAs in OSCC. Existing research demonstrates the involvement of lncRNA within pivotal pathways leading to the development and spread of OSCC, including interactions with key cancer-associated microRNAs such as miR-21. The number of studies on lncRNA and OSCC remains limited in this new field. As evidence grows, the tissue-specific expression patterns of lncRNAs should further advance our understanding of the altered regulatory networks in OSCC and possibly reveal new biomarkers and therapeutic targets.
PMID: 31140691
ISSN: 1601-0825
CID: 3902832