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Single and rare cell analysis-amplification methods. T7 based amplification protocols

Chapter by: Ginsberg, Stephen D
in: Microarrays in inflammation by Bosio, Andreas; Gerstmayer, Bernhard [Eds]
Basel : Birkhäuser, c2008
pp. 81-94
ISBN: 9783764383343
CID: 448572

Self-assembly of a DNA dodecahedron from 20 trisoligonucleotides with C(3h) linkers

Zimmermann, Jan; Cebulla, Martin P J; Monninghoff, Sven; von Kiedrowski, Gunter
PMID: 18383496
ISSN: 1521-3773
CID: 2471872

DPP6 Localization in Brain Supports Function as a Kv4 Channel Associated Protein

Clark, Brian D; Kwon, Elaine; Maffie, Jon; Jeong, Hyo-Young; Nadal, Marcela; Strop, Pavel; Rudy, Bernardo
The gene encoding the dipeptidyl peptidase-like protein DPP6 (also known as DPPX) has been associated with human neural disease. However, until recently no function had been found for this protein. It has been proposed that DPP6 is an auxiliary subunit of neuronal Kv4 K(+) channels, the ion channels responsible for the somato-dendritic A-type K(+) current, an ionic current with crucial roles in the regulation of firing frequency, dendritic integration and synaptic plasticity. This view has been supported mainly by studies showing that DPP6 is necessary to generate channels with biophysical properties resembling the native channels in some neurons. However, independent evidence that DPP6 is a component of neuronal Kv4 channels in the brain, and whether this protein has other functions in the CNS is still lacking. We generated antibodies to DPP6 proteins to compare their distribution in brain with that of the Kv4 pore-forming subunits. DPP6 proteins were prominently expressed in neuronal populations expressing Kv4.2 proteins and both types of protein were enriched in the dendrites of these cells, strongly supporting the hypothesis that DPP6 is an associated protein of Kv4 channels in brain neurons. The observed similarity in the cellular and subcellular patterns of expression of both proteins suggests that this is the main function of DPP6 in brain. However, we also found that DPP6 antibodies intensely labeled the hippocampal mossy fiber axons, which lack Kv4 proteins, suggesting that DPP6 proteins may have additional, Kv4-unrelated functions
PMCID:2576564
PMID: 18978958
ISSN: 1662-5099
CID: 94589

Neuroanatomy of ADHD

Chapter by: Castellanos, F Xavier; Ainslie, Eleanor
in: Attention deficit hyperactivity disorder : concepts, controversies, new directions by McBurnett, Keith; Pfiffner, Linda Jo (Eds)
New York : Informa Healthcare, 2008
pp. ?-?
ISBN: 0824729277
CID: 3100582

Action and outcome encoding in the primate caudate nucleus

Lau, Brian; Glimcher, Paul W
The basal ganglia appear to have a central role in reinforcement learning. Previous experiments, focusing on activity preceding movement execution, support the idea that dorsal striatal neurons bias action selection according to the expected values of actions. However, many phasically active striatal neurons respond at a time too late to initiate or select movements. Given the data suggesting a role for the basal ganglia in reinforcement learning, postmovement activity may therefore reflect evaluative processing important for learning the values of actions. To better understand these postmovement neurons, we determined whether individual striatal neurons encode information about saccade direction, whether a reward had been received, or both. We recorded from phasically active neurons in the caudate nucleus while monkeys performed a probabilistically rewarded delayed saccade task. Many neurons exhibited peak responses after saccade execution (77 of 149) that were often tuned for the direction of the preceding saccade (61 of 77). Of those neurons responding during the reward epoch, one subset showed direction tuning for the immediately preceding saccade (43 of 60), whereas another subset responded differentially on rewarded versus unrewarded trials (35 of 60). We found that there was relatively little overlap of these properties in individual neurons. The encoding of action and outcome was performed by largely separate populations of caudate neurons that were active after movement execution. Thus, striatal neurons active primarily after a movement appear to be segregated into two distinct groups that provide complimentary information about the outcomes of actions.
PMID: 18160658
ISSN: 0270-6474
CID: 199092

Mosaic removal of hedgehog signaling in the adult SVZ reveals that the residual wild-type stem cells have a limited capacity for self-renewal

Balordi, Francesca; Fishell, Gord
The Smoothened gene is necessary for cells to transduce hedgehog signaling. Although we and others have previously shown that embryonic removal of Smoothened in the neural tube results in a loss of stem cells from the postnatal subventricular zone, it was unclear whether this reflected a requirement for hedgehog signaling in the establishment or maintenance of the adult niche. Here, we have examined the consequences of conditional removal of Smoothened gene function within the subventricular zone of the adult neural stem cell niche. We observe that both proliferation and neurogenesis are compromised when hedgehog signaling is removed from subventricular zone stem cells. Moreover, even after a 10 month survival period, the stem cell niche fails to recover. It has been reported that the adult subventricular zone quickly rebounds from an antimitotic insult by increasing proliferation and replenishing the niche. During this recovery, it has been reported that hedgehog signaling appears to be upregulated. When mice in which hedgehog signaling in the subventricular zone has been strongly attenuated are given a similar antimitotic treatment, recovery is limited to the reduced level of proliferation and neurogenesis observed before the mitotic insult. Furthermore, the limited recovery that is observed appears to be largely restricted to the minority of neural stem cells that escape the conditional inactivation of Smoothened gene function. These results demonstrate that ongoing hedgehog signaling is required to maintain adult neural stem cells and that their ability to self-renew is limited
PMID: 18160632
ISSN: 1529-2401
CID: 75773

Cell adhesion and synaptogenesis

Chen, Gong; Wu, Xia; Tuncdemir, Sebnem
Synapses are inter-neuronal connections that are fundamental working units in neural networks. How synapses are molecularly constructed is a fascinating question, which attracted scientists' attention for many decades. Neuromuscular junction, a field pioneered by Te-Pei FENG and many others, has been an excellent model for studying synaptogenesis and paved the way for our understanding of the synapse formation in the central nervous system. Recent studies shed new light on the molecular mechanisms of central synapse formation by discovering a group of cell adhesion molecules exerting potent synaptogenic effects. This review will focus on those cell adhesion molecules which can induce central synapse formation when expressed in non-neuronal cells.
PMID: 18157464
ISSN: 0371-0874
CID: 381762

A remembrance of Professor TP FENG

Tsien, Richard W
PMID: 23012741
ISSN: 0371-0874
CID: 489632

Gap junction remodeling and cardiac arrhythmogenesis in a murine model of oculodentodigital dysplasia

Kalcheva, Nellie; Qu, Jiaxiang; Sandeep, Nefthi; Garcia, Luis; Zhang, Jie; Wang, Zhiyong; Lampe, Paul D; Suadicani, Sylvia O; Spray, David C; Fishman, Glenn I
Gap junction channels are required for normal cardiac impulse propagation, and gap junction remodeling is associated with enhanced arrhythmic risk. Oculodentodigital dysplasia (ODDD) is a multisystem syndrome due to mutations in the connexin43 (Cx43) gap junction channel gene. To determine the effects of a human connexin channelopathy on cardiac electrophysiology and arrhythmogenesis, we generated a murine model of ODDD by introducing the disease-causing I130T mutant allele into the mouse genome. Cx43 abundance was markedly reduced in mutant hearts with preferential loss of phosphorylated forms that interfered with trafficking and assembly of gap junctions in the junctional membrane. Dual whole-cell patch-clamp studies showed significantly lower junctional conductance between neonatal cell pairs from mutant hearts, and optical mapping of isolated-perfused hearts with voltage-sensitive dyes demonstrated significant slowing of conduction velocity. Programmed electrical stimulation revealed a markedly increased susceptibility to spontaneous and inducible ventricular tachyarrhythmias. In summary, our data demonstrate that the I130T mutation interferes with Cx43 posttranslational processing, resulting in diminished cell-cell coupling, slowing of impulse propagation, and a proarrhythmic substrate
PMCID:2154462
PMID: 18077386
ISSN: 1091-6490
CID: 75195

Insulin dysfunction induces in vivo tau hyperphosphorylation through distinct mechanisms

Planel, Emmanuel; Tatebayashi, Yoshitaka; Miyasaka, Tomohiro; Liu, Li; Wang, Lili; Herman, Mathieu; Yu, W Haung; Luchsinger, Jose A; Wadzinski, Brian; Duff, Karen E; Takashima, Akihiko
Hyperphosphorylated tau is the major component of paired helical filaments in neurofibrillary tangles found in Alzheimer's disease (AD) brains, and tau hyperphosphorylation is thought to be a critical event in the pathogenesis of the disease. The large majority of AD cases is late onset and sporadic in origin, with aging as the most important risk factor. Insulin resistance, impaired glucose tolerance, and diabetes mellitus (DM) are other common syndromes in the elderly also strongly age dependent, and there is evidence supporting a link between insulin dysfunction and AD. To investigate the possibility that insulin dysfunction might promote tau pathology, we induced insulin deficiency and caused DM in mice with streptozotocin (STZ). A mild hyperphosphorylation of tau could be detected 10, 20, and 30 d after STZ injection, and a massive hyperphosphorylation of tau was observed after 40 d. The robust hyperphosphorylation of tau was localized in the axons and neuropil, and prevented tau binding to microtubules. Neither mild nor massive tau phosphorylation induced tau aggregation. Body temperature of the STZ-treated mice did not differ from control animals during 30 d, but dropped significantly thereafter. No change in beta-amyloid (Abeta) precursor protein (APP), APP C-terminal fragments, or Abeta levels were observed in STZ-treated mice; however, cellular protein phosphatase 2A activity was significantly decreased. Together, these data indicate that insulin dysfunction induced abnormal tau hyperphosphorylation through two distinct mechanisms: one was consequent to hypothermia; the other was temperature-independent, inherent to insulin depletion, and probably caused by inhibition of phosphatase activity
PMID: 18077675
ISSN: 1529-2401
CID: 150683