Searched for: school:SOM
Department/Unit:Cell Biology
Proteomic Analysis of Pancreatic Zymogen Granules: Identification of New Granule Proteins
Rindler, Michael J; Xu, Chong-Feng; Gumper, Iwona; Smith, Nora N; Neubert, Thomas A
The composition of zymogen granules from rat pancreas was determined by LC-MS/MS. Enriched intragranular content, peripheral membrane, and integral membrane protein fractions were analyzed after one-dimensional SDS-PAGE and tryptic digestion of gel slices. A total of 371 proteins was identified with high confidence, including 84 previously identified granule proteins. The 287 remaining proteins included 37 GTP-binding proteins and effectors, 8 tetraspan membrane proteins, and 22 channels and transporters. Seven proteins, pantophysin, cyclic nucleotide phosphodiesterase, carboxypeptidase D, ecto-nucleotide phosphodiesterase 3, aminopeptidase N, ral, and the potassium channel TWIK-2, were confirmed by immunofluorescence microscopy or by immunoblotting to be new zymogen granule membrane proteins. Keywords: proteomics * mass spectrometry * LC-MS/MS * pancreas * zymogen granules * acinar cells.
PMCID:2582026
PMID: 17583932
ISSN: 1535-3893
CID: 72969
The minimum information about a proteomics experiment (MIAPE)
Taylor, Chris F; Paton, Norman W; Lilley, Kathryn S; Binz, Pierre-Alain; Julian, Randall K Jr; Jones, Andrew R; Zhu, Weimin; Apweiler, Rolf; Aebersold, Ruedi; Deutsch, Eric W; Dunn, Michael J; Heck, Albert J R; Leitner, Alexander; Macht, Marcus; Mann, Matthias; Martens, Lennart; Neubert, Thomas A; Patterson, Scott D; Ping, Peipei; Seymour, Sean L; Souda, Puneet; Tsugita, Akira; Vandekerckhove, Joel; Vondriska, Thomas M; Whitelegge, Julian P; Wilkins, Marc R; Xenarios, Ioannnis; Yates, John R 3rd; Hermjakob, Henning
Both the generation and the analysis of proteomics data are now widespread, and high-throughput approaches are commonplace. Protocols continue to increase in complexity as methods and technologies evolve and diversify. To encourage the standardized collection, integration, storage and dissemination of proteomics data, the Human Proteome Organization's Proteomics Standards Initiative develops guidance modules for reporting the use of techniques such as gel electrophoresis and mass spectrometry. This paper describes the processes and principles underpinning the development of these modules; discusses the ramifications for various interest groups such as experimentalists, funders, publishers and the private sector; addresses the issue of overlap with other reporting guidelines; and highlights the criticality of appropriate tools and resources in enabling 'MIAPE-compliant' reporting
PMID: 17687369
ISSN: 1087-0156
CID: 73905
Cavitary acetabular defects treated with morselized cancellous bone graft and cementless cups
Pereira, G C T; Kubiak, E N; Levine, B; Chen, F S; Di Cesare, P E
The use of impacted morselized cancellous bone grafts in conjunction with cementless hemispherical acetabular cups for treatment of AAOS type II acetabular cavitary deficiencies was evaluated in a retrospective study of 23 primary and 24 revision total hip arthroplasties, at a mean follow-up of 7.9 and 8.1 years, respectively. All primary hips received autografts, while all revision hips received allografts. Modified Harris Hip Scores for primary and revision hip replacements increased from a pre-operative mean of 37 and 47 to a postoperative mean of 90 and 86, respectively. All 23 autografts and 23 out of 24 cancellous allografts were radiographically incorporated without evidence of resorption. There were no instances of infection, component migration, or cases requiring subsequent acetabular revision. We conclude that impacted morselized cancellous bone-graft augmentation of cementless cups is a viable surgical option for AAOS type II cavitary acetabular defects
PMCID:2267649
PMID: 16988799
ISSN: 0341-2695
CID: 73877
Elevated plasma cholesterol does not affect brain Abeta in mice lacking the low-density lipoprotein receptor
Elder, Gregory A; Cho, Julie Y; English, Daniel F; Franciosi, Sonia; Schmeidler, James; Sosa, Miguel A Gama; Gasperi, Rita De; Fisher, Edward A; Mathews, Paul M; Haroutunian, Vahram; Buxbaum, Joseph D
Epidemiological studies support an association between vascular risk factors, including hypercholesterolemia, and Alzheimer's disease (AD). Recently, there has been much interest in the possibility that hypercholesterolemia might directly promote beta-amyloid (Abeta) production. Indeed, in vitro studies have shown that increasing cellular cholesterol levels enhances Abeta production. However, studies in AD transgenic mouse models have not consistently found that elevated plasma cholesterol leads to increased Abeta production or deposition in vivo. In this study, we determined whether elevated peripheral cholesterol influences Abeta production in mice with a null mutation of the low-density lipoprotein receptor (LDLR). We show that dramatically elevated plasma cholesterol levels, whether induced by high cholesterol, high fat, or high fat/high cholesterol diets, did not affect either levels of brain Abeta40, Abeta42, or APP, or the Abeta42/40 or APP-CTF/APP ratios, nor substantially alter brain cholesterol levels. ApoE protein levels in brain were, however, elevated, in LDLR-/- mice by post-transcriptional mechanisms. Collectively, these studies argue that plasma cholesterol levels do not normally regulate production of brain Abeta
PMID: 17472705
ISSN: 0022-3042
CID: 73883
Disruption of peripheral leptin signaling in mice results in hyperleptinemia without associated metabolic abnormalities
Guo, Kaiying; McMinn, Julie E; Ludwig, Thomas; Yu, Yi-Hao; Yang, Guoqing; Chen, Lulu; Loh, Daniella; Li, Cai; Chua, Streamson Jr; Zhang, Yiying
Although central leptin signaling appears to play a major role in the regulation of food intake and energy metabolism, the physiological role of peripheral leptin signaling and its relative contribution to whole-body energy metabolism remain unclear. To address this question, we created a mouse model (Cre-Tam mice) with an intact leptin receptor in the brain but a near-complete deletion of the signaling domain of leptin receptor in liver, adipose tissue, and small intestine using a tamoxifen (Tam)-inducible Cre-LoxP system. Cre-Tam mice developed marked hyperleptinemia (approximately 4-fold; P < 0.01) associated with 2.3-fold increase (P < 0.05) in posttranscriptional production of leptin. Whereas this is consistent with the disruption of a negative feedback regulation of leptin production in adipose tissue, there were no discernable changes in energy balance, thermoregulation, and insulin sensitivity. Hypothalamic levels of phosphorylated signal transducer and activator of transcription 3, neuropeptide expression, and food intake were not changed despite hyperleptinemia. The percentage of plasma-bound leptin was markedly increased (90.1-96 vs. 41.8-74.7%; P < 0.05), but plasma-free leptin concentrations remained unaltered in Cre-Tam mice. We conclude from these results that 1) the relative contribution to whole-body energy metabolism from peripheral leptin signaling is insignificant in vivo, 2) leptin signaling in adipocyte constitutes a distinct short-loop negative feedback regulation of leptin production that is independent of tissue metabolic status, and 3) perturbation of peripheral leptin signaling alone, although increasing leptin production, may not be sufficient to alter the effective plasma levels of leptin because of the counter-regulatory increase in the level of leptin binding protein(s).
PMID: 17495001
ISSN: 0013-7227
CID: 762342
Vessel and blood specification override cardiac potential in anterior mesoderm
Schoenebeck, Jeffrey J; Keegan, Brian R; Yelon, Deborah
Organ progenitors arise within organ fields, embryonic territories that are larger than the regions required for organ formation. Little is known about the regulatory pathways that define organ field boundaries and thereby limit organ size. Here we identify a mechanism for restricting heart size through confinement of the developmental potential of the heart field. Via fate mapping in zebrafish, we locate cardiac progenitors within hand2-expressing mesoderm and demonstrate that hand2 potentiates cardiac differentiation within this region. Beyond the rostral boundary of hand2 expression, we find progenitors of vessel and blood lineages. In embryos deficient in vessel and blood specification, rostral mesoderm undergoes a fate transformation and generates ectopic cardiomyocytes. Therefore, induction of vessel and blood specification represses cardiac specification and delimits the capacity of the heart field. This regulatory relationship between cardiovascular pathways suggests strategies for directing progenitor cell differentiation to facilitate cardiac regeneration
PMCID:2709538
PMID: 17681136
ISSN: 1534-5807
CID: 73953
Dysregulation of brain APP in the Ts65Dn Down syndrome mouse [Meeting Abstract]
Choi, JH; Mazzella, MJ; Berger, JD; Cataldo, AM; Ginsberg, SD; Levy, E; Nixon, RA; Mathews, PM
ISI:000248991600315
ISSN: 0022-3042
CID: 74183
A maternal screen for genes required for Drosophila oocyte polarity uncovers new steps of meiotic progression
Barbosa, Vitor; Kimm, Naomi; Lehmann, Ruth
Meiotic checkpoints monitor chromosome status to ensure correct homologous recombination, genomic integrity and chromosome segregation. In Drosophila the persistent presence of double strand DNA breaks (DSB) activates the ATR/Mei-41 checkpoint, delays progression through meiosis and causes defects in DNA condensation of the oocyte nucleus, the karyosome. Checkpoint activation has also been linked to decreased levels of the TGF+/--like molecule Gurken, which controls normal eggshell patterning. We used this easy scorable eggshell phenotype in a germ line mosaic screen in Drosophila to identify new genes affecting meiotic progression, DNA condensation and Gurken signaling. 118 new ventralizing mutants on the second chromosome fell into 17 complementation groups. Here we describe the analysis of eight complementation groups, including Kinesin heavy chain, the SR protein kinase cuaba, the cohesin-related gene dPds5/cohiba and the Tudor domain gene montecristo. Our findings challenge the hypothesis that checkpoint activation upon persistent DSBs is exclusively mediated by ATR/Mei-41 kinase and instead reveals a more complex network of interactions that link DSB formation, checkpoint activation, meiotic delay, DNA condensation and Gurken protein synthesis.
PMCID:1950606
PMID: 17507684
ISSN: 0016-6731
CID: 72703
Enucleated L929 cells support invasion, differentiation, and multiplication of Trypanosoma cruzi parasites
Coimbra, Vanessa C; Yamamoto, Denise; Khusal, Ketna G; Atayde, Vanessa Diniz; Fernandes, Maria Cecilia; Mortara, Renato A; Yoshida, Nobuko; Alves, Maria Julia M; Rabinovitch, Michel
Cell infection with Trypanosoma cruzi, the agent of Chagas' disease, begins with the uptake of infective trypomastigotes within phagosomes and their release into the cytosol, where they transform into replicating amastigotes; the latter, in turn, differentiate into cytolytically released and infective trypomastigotes. We ask here if the T. cruzi infection program can develop in enucleated host cells. Monolayers of L929 cells, enucleated by centrifugation in the presence of cytochalasin B and kept at 34 degrees C to extend the survival of cytoplasts, were infected with parasites of the CL strain. Percent infection, morphology, stage-specific markers, and numbers of parasites per cell were evaluated in nucleated and enucleated cells, both of which were present in the same preparations. Parasite uptake, differentiation and multiplication of amastigotes, development of epimastigote- and trypomastigote-like forms, and initial cytolytic release of parasites were all documented for cytoplasts and nucleated cells. Although the doubling times were similar, parasite loads at 48 and 72 h were significantly lower in the cytoplasts than in nucleated cells. Similar results were obtained with the highly virulent strain Y as well as with strains CL-14 and G, which exhibit low virulence for mice. Cytoplasts could also be infected with the CL strain 24 or 48 h after enucleation. Thus, infection of cells by T. cruzi can take place in enucleated host cells, i.e., in the absence of modulation of chromosomal and nucleolar gene transcription and of RNA modification and processing in the nucleus.
PMCID:1951981
PMID: 17502387
ISSN: 0019-9567
CID: 175519
db/db mice exhibit severe wound-healing impairments compared with other murine diabetic strains in a silicone-splinted excisional wound model
Michaels, Joseph 5th; Churgin, Samara S; Blechman, Keith M; Greives, Matthew R; Aarabi, Shahram; Galiano, Robert D; Gurtner, Geoffrey C
The pathophysiology of diabetic wound healing and the identification of new agents to improve clinical outcomes continue to be areas of intense research. There currently exist more than 10 different murine models of diabetes. The degree to which wound healing is impaired in these different mouse models has never been directly compared. We determined whether differences in wound impairment exist between diabetic models in order to elucidate which model would be the best to evaluate new treatment strategies. Three well-accepted mouse models of diabetes were used in this study: db/db, Akita, and streptozocin (STZ)-induced C57BL/6J. Using an excisional model of wound healing, we demonstrated that db/db mice exhibit severe impairments in wound healing compared with STZ and Akita mice. Excisional wounds in db/db mice show a statistically significant delay in wound closure, decreased granulation tissue formation, decreased wound bed vascularity, and markedly diminished proliferation compared with STZ, Akita, and control mice. There was no difference in the rate of epithelialization of the full-thickness wounds between the diabetic or control mice. Our results suggest that splinted db/db mice may be the most appropriate model for studying diabetic wound-healing interventions as they demonstrate the most significant impairment in wound healing. This study utilized a novel model of wound healing developed in our laboratory that stents wounds open using silicone splints to minimize the effects of wound contraction. As such, it was not possible to directly compare the results of this study with other studies that did not use this wound model
PMID: 17971012
ISSN: 1067-1927
CID: 75768