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Department/Unit:Cell Biology

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14233


The minimum information about a proteomics experiment (MIAPE)

Taylor, Chris F; Paton, Norman W; Lilley, Kathryn S; Binz, Pierre-Alain; Julian, Randall K Jr; Jones, Andrew R; Zhu, Weimin; Apweiler, Rolf; Aebersold, Ruedi; Deutsch, Eric W; Dunn, Michael J; Heck, Albert J R; Leitner, Alexander; Macht, Marcus; Mann, Matthias; Martens, Lennart; Neubert, Thomas A; Patterson, Scott D; Ping, Peipei; Seymour, Sean L; Souda, Puneet; Tsugita, Akira; Vandekerckhove, Joel; Vondriska, Thomas M; Whitelegge, Julian P; Wilkins, Marc R; Xenarios, Ioannnis; Yates, John R 3rd; Hermjakob, Henning
Both the generation and the analysis of proteomics data are now widespread, and high-throughput approaches are commonplace. Protocols continue to increase in complexity as methods and technologies evolve and diversify. To encourage the standardized collection, integration, storage and dissemination of proteomics data, the Human Proteome Organization's Proteomics Standards Initiative develops guidance modules for reporting the use of techniques such as gel electrophoresis and mass spectrometry. This paper describes the processes and principles underpinning the development of these modules; discusses the ramifications for various interest groups such as experimentalists, funders, publishers and the private sector; addresses the issue of overlap with other reporting guidelines; and highlights the criticality of appropriate tools and resources in enabling 'MIAPE-compliant' reporting
PMID: 17687369
ISSN: 1087-0156
CID: 73905

Dysregulation of brain APP in the Ts65Dn Down syndrome mouse [Meeting Abstract]

Choi, JH; Mazzella, MJ; Berger, JD; Cataldo, AM; Ginsberg, SD; Levy, E; Nixon, RA; Mathews, PM
ISI:000248991600315
ISSN: 0022-3042
CID: 74183

The role of Ras signaling in lupus T lymphocytes: biology and pathogenesis

Mor, Adam; Philips, Mark R; Pillinger, Michael H
Ras is a GTP-binding protein that plays multiple important roles in cell activation, including proliferative and inflammatory responses. Ras regulation is complex and depends upon post-translational processing, organelle-specific localization and the activation/deactivation of Ras by a number of regulatory molecules. Ras activation in T lymphocytes demonstrates unique features, including its dependence on the T cell receptor and the ability of Ras to signal from both the plasma membrane and the Golgi. Abnormalities of Ras expression, activation and signaling pathways in T lymphocytes appear to play important roles in the development of autoimmunity in general, and systemic lupus erythematosus in particular. In this manuscript, we review the basic biology of Ras in T lymphocytes, and the ways in which T lymphocyte Ras abnormalities may contribute to the development of a lupus phenotype
PMID: 17913587
ISSN: 1521-6616
CID: 75658

Nectin-like proteins mediate axon Schwann cell interactions along the internode and are essential for myelination

Maurel, Patrice; Einheber, Steven; Galinska, Jolanta; Thaker, Pratik; Lam, Isabel; Rubin, Marina B; Scherer, Steven S; Murakami, Yoshinuri; Gutmann, David H; Salzer, James L
Axon-glial interactions are critical for the induction of myelination and the domain organization of myelinated fibers. Although molecular complexes that mediate these interactions in the nodal region are known, their counterparts along the internode are poorly defined. We report that neurons and Schwann cells express distinct sets of nectin-like (Necl) proteins: axons highly express Necl-1 and -2, whereas Schwann cells express Necl-4 and lower amounts of Necl-2. These proteins are strikingly localized to the internode, where Necl-1 and -2 on the axon are directly apposed by Necl-4 on the Schwann cell; all three proteins are also enriched at Schmidt-Lanterman incisures. Binding experiments demonstrate that the Necl proteins preferentially mediate heterophilic rather than homophilic interactions. In particular, Necl-1 on axons binds specifically to Necl-4 on Schwann cells. Knockdown of Necl-4 by short hairpin RNA inhibits Schwann cell differentiation and subsequent myelination in cocultures. These results demonstrate a key role for Necl-4 in initiating peripheral nervous system myelination and implicate the Necl proteins as mediators of axo-glial interactions along the internode
PMCID:2064549
PMID: 17724124
ISSN: 0021-9525
CID: 75370

"Pediatric blaschkitis": expanding the spectrum of childhood acquired Blaschko-linear dermatoses [Case Report]

Keegan, Brian R; Kamino, Hideko; Fangman, William; Shin, Helen T; Orlow, Seth J; Schaffer, Julie V
We describe two young children who developed relapsing, pruritic, papulovesicular eruptions in multiple bands along Blaschko lines on the neck, trunk, and extremities. Skin specimens in both revealed spongiotic dermatitis. This represents the first report of 'blaschkitis' in children, providing further evidence that lichen striatus and blaschkitis are related acquired Blaschko-linear dermatoses that exist on a spectrum rather than as the childhood and adult form of a single disease entity. We highlight the features that differentiate blaschkitis from lichen striatus, review the potential roles of cutaneous mosaicism, environmental triggers, and background immunologic state in their pathogenesis, and discuss the spectrum of inflammatory dermatoses that can follow Blaschko lines
PMID: 18035983
ISSN: 1525-1470
CID: 75486

db/db mice exhibit severe wound-healing impairments compared with other murine diabetic strains in a silicone-splinted excisional wound model

Michaels, Joseph 5th; Churgin, Samara S; Blechman, Keith M; Greives, Matthew R; Aarabi, Shahram; Galiano, Robert D; Gurtner, Geoffrey C
The pathophysiology of diabetic wound healing and the identification of new agents to improve clinical outcomes continue to be areas of intense research. There currently exist more than 10 different murine models of diabetes. The degree to which wound healing is impaired in these different mouse models has never been directly compared. We determined whether differences in wound impairment exist between diabetic models in order to elucidate which model would be the best to evaluate new treatment strategies. Three well-accepted mouse models of diabetes were used in this study: db/db, Akita, and streptozocin (STZ)-induced C57BL/6J. Using an excisional model of wound healing, we demonstrated that db/db mice exhibit severe impairments in wound healing compared with STZ and Akita mice. Excisional wounds in db/db mice show a statistically significant delay in wound closure, decreased granulation tissue formation, decreased wound bed vascularity, and markedly diminished proliferation compared with STZ, Akita, and control mice. There was no difference in the rate of epithelialization of the full-thickness wounds between the diabetic or control mice. Our results suggest that splinted db/db mice may be the most appropriate model for studying diabetic wound-healing interventions as they demonstrate the most significant impairment in wound healing. This study utilized a novel model of wound healing developed in our laboratory that stents wounds open using silicone splints to minimize the effects of wound contraction. As such, it was not possible to directly compare the results of this study with other studies that did not use this wound model
PMID: 17971012
ISSN: 1067-1927
CID: 75768

Unique role of ARMS in neurotrophin-mediated activation of NF-kappa B and neuronal protection against HIV-1 encoded gp120 [Meeting Abstract]

Sniderhan, LF; Ramirez, SH; Litzburg, A; Lu, YN; Chao, MV; Maggirwar, SB
ISI:000250754000251
ISSN: 1355-0284
CID: 75948

Caenorhabditis elegans germ line: a model for stem cell biology

Hubbard, E Jane Albert
Like many stem cell systems, the Caenorhabditis elegans germ line contains a self-renewing germ cell population that is maintained by a niche. Although the exact cellular mechanism for self-renewal is not yet known, three recent studies shed considerable light on the cell cycle behavior of germ cells, including a support for significant and plastic renewal potential. This review brings together the results of the three recent cell-based studies, places them in the context of previous work, and discusses future perspectives for the field
PMCID:2949268
PMID: 17948315
ISSN: 1058-8388
CID: 76109

Relative risk factors for requirement of blood transfusion after total hip arthroplasty

Walsh, Michael; Preston, Charles; Bong, Matthew; Patel, Vipul; Di Cesare, Paul E
One thousand thirty-five total hip arthroplasty (THA) cases were retrospectively reviewed, and the number and type (autologous and allogenic) of postoperative units of blood transfused were analyzed with respect to pre-, intra-, and postoperative variables. The most significant and consistent predictors of a blood transfusion after THA were advanced age and the use of low-molecular-weight heparin for deep venous thrombosis prophylaxis. Our recommendations for predonation are 1 unit for THA patients younger than 75 years if hemoglobin is 130 g/dL or greater and 2 units or a combination of 1 unit of predonated blood and 1 unit of directed or banked blood for THA patients older than 75 years
PMID: 18078885
ISSN: 0883-5403
CID: 76386

Developmental and activity-dependent regulation of ARMS/Kidins220 in cultured rat hippocampal neurons

Cortes, Rosa Y; Arevalo, Juan Carlos; Magby, Jason P; Chao, Moses V; Plummer, Mark R
Neurotrophin activation of Trk receptors elicits diverse effects on neuronal survival, differentiation, and synaptic plasticity. One of the central questions is how specificity is encoded in neurotrophin receptor signaling and actions. A unique downstream protein is the Ankyrin-Repeat Rich Membrane Spanning (ARMS)/Kinase D-interacting substrate-220 kDa (Kidins220), a very abundant scaffold protein in the hippocampus. To determine the roles of ARMS/Kidins220 in hippocampal neurons, we have analyzed the effects of synaptic activity upon the regulation and distribution of ARMS/Kidins220. At early times in vitro (<7 DIV), synaptic activity was low and ARMS/Kidins220 levels were high. As synaptic activity and markers for synapse maturation, such as PSD-95, increased, ARMS/Kidins220 significantly decreased to a plateau by later times in vitro (>12 DIV). Immunocytochemistry showed ARMS/Kidins220 to be concentrated at the tips of growing processes in immature cultures, and more diffusely distributed in older cultures. To examine the apparent inverse relationship between activity and ARMS/Kidins220 levels, neuronal firing was manipulated pharmacologically. Chronic exposure to TTX increased ARMS/Kidins220 levels, whereas bicuculline caused the opposite effect. Moreover, using shRNA to decrease ARMS/Kidins220 levels produced a corresponding increase in synaptic activity. We find that ARMS/Kidins220 may function in neuronal development as an indicator and potentially as a homeostatic regulator of overall synaptic strength in hippocampal neurons
PMID: 17587220
ISSN: 1932-8451
CID: 77792