Searched for: school:SOM
Department/Unit:Neuroscience Institute
Clinical application of a semiautomatic 3D fusion tool where automatic fusion techniques are difflicult to use [Meeting Abstract]
Noz, ME; Maguire, GQ; Zeleznik, MP; Olivecrona, L; Olivecrona, H; Axel, L; Srichai, MB; Moy, L; Murphy-Walcott, A
The purpose of this paper is to demonstrate the clinical advantages of using semiautomatic volume registration where automatic registration is problematic due to large deformations, small bone anatomy, or extraneous structures. Examples are drawn from clinical cases of MRI/PET breast studies, CT angiography/SPECT cardiac studies, and total wrist arthroplasty. These types of studies should be contrasted with those involving the head, thorax, and pelvis where there is much less deformation and the existence of (some) large bones facilitates automatic matching
ISI:000239485200024
ISSN: 0302-9743
CID: 69353
Hybrid deformable models for medical segmentation and registration
Chapter by: Metaxas, Dimitris N.; Qian, Zhen; Huang, Xiaolei; Huang, Rui; Chen, Ting; Axel, Leon
in: 2006 9TH INTERNATIONAL CONFERENCE ON CONTROL, AUTOMATION, ROBOTICS AND VISION, VOLS 1- 5 by
NEW YORK : IEEE, 2006
pp. 2404-?
ISBN: 978-1-4244-0341-7
CID: 2932272
Latent TGF-{beta}1-transduced CD4+ T cells suppress the progression of allergic encephalomyelitis
Murano, Mitsuyuki; Xiong, Xiaozhong; Murano, Naoko; Salzer, James L; Lafaille, Juan J; Tsiagbe, Vincent K
Systemic injection of small amounts of transforming growth factor-beta (TGF-beta), a cytokine produced by lymphoid and other cells, has a profound effect in protecting mice from the inflammatory demyelinating lesions of experimental allergic encephalomyelitis (EAE; an animal model for multiple sclerosis). However, TGF-beta has side-effects, which might be avoided if the cells producing TGF-beta can be delivered to the affected site in the nervous system to insure its local release in small amounts. Myelin basic protein (MBP)-specific, cloned CD4(+) T cells were engineered by retroviral transduction to produce latent TGF-beta. Studies about the spontaneous form of EAE in T cell receptor (TCR)-transgenic recombination-activating gene (RAG)-1(-/-) mice showed that essentially all of the MBP-specific, TCR-transgenic RAG-1(-/-) (BALB/cxB10.PL)F1 mice develop spontaneous EAE by the age of 11 weeks. By 12 weeks, 25-50% of the mice have died from disease. A single injection of TGF-beta1-transduced T helper cell type 1 (Th1) cells significantly protected the mice from EAE, and untransduced Th1 cells did not protect. MBP-specific BALB/c Th2 clones, transduced with TGF-beta1-internal ribosome entry site-green fluorescent protein (GFP) significantly reduced EAE induction by untransduced Th1 cells in RAG-1(-/-) B10.PL mice. Furthermore, the GFP(+) TGF-beta1-producing Th2 cells were detectable in the spinal cords of the injected mice
PMID: 16244108
ISSN: 0741-5400
CID: 61318
Allosteric control of an ionotropic glutamate receptor with an optical switch
Volgraf, Matthew; Gorostiza, Pau; Numano, Rika; Kramer, Richard H; Isacoff, Ehud Y; Trauner, Dirk
The precise regulation of protein activity is fundamental to life. The allosteric control of an active site by a remote regulatory binding site is a mechanism of regulation found across protein classes, from enzymes to motors to signaling proteins. We describe a general approach for manipulating allosteric control using synthetic optical switches. Our strategy is exemplified by a ligand-gated ion channel of central importance in neuroscience, the ionotropic glutamate receptor (iGluR). Using structure-based design, we have modified its ubiquitous clamshell-type ligand-binding domain to develop a light-activated channel, which we call LiGluR. An agonist is covalently tethered to the protein through an azobenzene moiety, which functions as the optical switch. The agonist is reversibly presented to the binding site upon photoisomerization, initiating clamshell domain closure and concomitant channel gating. Photoswitching occurs on a millisecond timescale, with channel conductances that reflect the photostationary state of the azobenzene at a given wavelength. Our device has potential uses not only in biology but also in bioelectronics and nanotechnology.
PMCID:1447676
PMID: 16408092
ISSN: 1552-4450
CID: 2485532
Software for digital filmless roentgenography
Olshevetz, MM; Ustinin, MN; Nikonov, IA
At the Pushchino biology research center, Russian Academy of Sciences, a system for digital filmless roentgenography was developed. The system includes a computer program for obtaining, viewing, processing, storing, and printing digital X-ray images. The system has been working at a rural hospital in the Moscow region for several years.
INSPEC:8933124
ISSN: 1054-6618
CID: 2674162
Clinical significance of dilated Virchow-Robin spaces in mild traumatic brain injury
Inglese, Matilde; Grossman, Robert I; Diller, Leonard; Babb, James S; Gonen, Oded; Silver, Jonathan M A; Rusinek, Henry
PRIMARY OBJECTIVE: To investigate the relationship between the number of dilated Virchow-Robin spaces (VRS) and neurocognitive findings in patients with traumatic brain injury (TBI). RESEARCH DESIGN: Thirty-eight patients with TBI and 21 controls were studied. METHODS AND PROCEDURES: Fifteen patients underwent MRI within a mean interval of 5.4 (range 1-12) days from the brain injury and 23 after an average period of 5.5 (range 0.2-31) years. All subjects were examined with a battery of 13 neuropsychological tests (NP). MAIN OUTCOMES AND RESULTS: The average number of VRS was significantly higher in patients than in controls. There were no significant differences between patients and controls in terms of NP tests. The number of VRS showed a significant inverse correlation with processing speed and a positive correlation with visual perceptual of attention only in patients studied within a short delay of trauma. CONCLUSIONS: VRS are not directly associated to neurocognitive findings, suggesting that they may represent a result of the shear-strain injury
PMID: 16403696
ISSN: 0269-9052
CID: 66693
How to find decision makers in neural networks (vol 93, pg 447, 2005) [Correction]
Koulakov, AA; Rinberg, DA; Tsigankov, DN
ISI:000234274100009
ISSN: 0340-1200
CID: 800702
Increased EEG power and slowed dominant frequency in patients with neurogenic pain
Sarnthein, Johannes; Stern, Jair; Aufenberg, Christoph; Rousson, Valentin; Jeanmonod, Daniel
To study the mechanisms of chronic neurogenic pain, we compared the power spectra of the resting EEG of patients (n = 15, 38-75 years, median 64 years, 6 women) and healthy controls (n = 15, 41-71 years, median 60 years, 8 women). On an average, the patient group exhibited higher spectral power over the frequency range of 2-25 Hz, and the dominant peak was shifted towards lower frequencies. Maximal differences appeared in the 7-9 Hz band in all electrodes. Frontal electrodes contributed most to this difference in the 13-15 Hz band. Bicoherence analysis suggests an enhanced coupling between theta (4-9 Hz) and beta (12-25 Hz) frequencies in patients. The subgroup of six patients free from centrally acting medication showed higher spectral power in the 2-18 Hz frequency range. On an individual basis, the combination of peak height and peak frequency discriminated between patient and control groups: discriminant analysis classified 87% of all subjects correctly. After a therapeutic lesion in the thalamus (central lateral thalamotomy, CLT) we carried out follow-up for a subgroup of seven patients. Median pain relief was 70 and 95% after 3 and 12 months, respectively. The average EEG power of all seven patients gradually decreased in the theta band and approached normal values only after 12 months. The excess theta EEG power in patients and its decrease after thalamic surgery suggests that both EEG and neurogenic pain are determined by tightly coupled thalamocortical loops. The small therapeutic CLT lesion is thought to initiate a progressive normalization in the affected thalamocortical system, which is reflected in both decrease of EEG power and pain relief
PMID: 16183660
ISSN: 1460-2156
CID: 142845
Carotid artery stent implantation: evaluation with multi-detector row CT angiography and virtual angioscopy--initial experience
Orbach, Darren B; Pramanik, Bidyut K; Lee, Julie; Maldonado, Thomas S; Riles, Tom; Grossman, Robert I
Approval for this HIPAA-compliant study was obtained from the institutional review board; informed consent was not required for retrospective review of patient studies that had been performed for clinical evaluation. The purpose of this study was to retrospectively compare the accuracy of intrastent luminal diameter, as measured on transverse computed tomographic (CT) angiograms and virtual angioscopic views, with the manufacturer's specifications for phantom diameter and with digital subtraction angiographic (DSA) measurements of stent diameter obtained in patients. Intrastent diameter was measured by using standard and stent-optimized reconstruction kernels with three window settings. Endoluminal virtual angioscopic views of the stent-containing vessels were also generated. Measurements at CT angiography were compared with known specifications for the phantom and with DSA measurements in patients. Erroneous measurements of intrastent diameter occurred when a standard kernel and nonoptimized window settings were used. A set of parameters that minimized error relative to measurements obtained at DSA was also identified. Virtual angioscopy helped demonstrate morphologic aspects of stenosis that were otherwise difficult to appreciate
PMID: 16373775
ISSN: 0033-8419
CID: 61246
Multislice, dual-imaging sequence for increasing the dynamic range of the contrast-enhanced blood signal and CNR of myocardial enhancement at 3T
Kim, Daniel; Axel, Leon
PURPOSE: To develop a multislice, first-pass perfusion imaging sequence for increasing the effective dynamic range of the contrast-enhanced blood signal and the contrast-to-noise ratio (CNR) of myocardial wall enhancement. MATERIALS AND METHODS: A hybrid echo-planar imaging (EPI) pulse sequence was modified to acquire data for both the arterial input function (AIF) and the myocardium, using two different saturation-recovery time delays (TDs) and spatial resolutions, after a single saturation pulse. Five healthy subjects were scanned at 3T in three short-axis levels of the heart per heartbeat during passage of a high-dose bolus of contrast agent. The T(1)-weighted signal-time curve of the blood was converted to AIF using empirical conversion tables derived from phantom experiments. RESULTS: In all subjects the calculated AIF was consistently less distorted and higher for the short-TD protocol than for the long-TD protocol (peak concentration: 5.0 +/- 1.0 mM vs. 3.0 +/- 0.6 mM; P < 0.01). A combination of EPI, long TD, high-dose bolus of contrast agent, and 3T imaging yielded relatively strong peak enhancement in the myocardium (CNR = 11.9 +/- 3.3). CONCLUSION: Our dual-imaging approach at 3T seems promising for acquiring both a relatively accurate AIF and a high CNR of myocardial wall enhancement in multiple slices per heartbeat
PMID: 16331593
ISSN: 1053-1807
CID: 66761