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Identification of a depupylation regulator for an essential enzyme in Mycobacterium tuberculosis

Kahne, Shoshanna C; Yoo, Jin Hee; Chen, James; Nakedi, Kehilwe; Iyer, Lakshminarayan M; Putzel, Gregory; Samhadaneh, Nora M; Pironti, Alejandro; Aravind, L; Ekiert, Damian C; Bhabha, Gira; Rhee, Kyu Y; Darwin, K Heran
In Mycobacterium tuberculosis (Mtb), proteins that are posttranslationally modified with a prokaryotic ubiquitin-like protein (Pup) can be degraded by bacterial proteasomes. A single Pup-ligase and depupylase shape the pupylome, but the mechanisms regulating their substrate specificity are incompletely understood. Here, we identified a depupylation regulator, a protein called CoaX, through its copurification with the depupylase Dop. CoaX is a pseudopantothenate kinase that showed evidence of binding to pantothenate, an essential nutrient Mtb synthesizes, but not its phosphorylation. In a ∆coaX mutant, pantothenate synthesis enzymes including PanB, a substrate of the Pup-proteasome system (PPS), were more abundant than in the parental strain. In vitro, CoaX specifically accelerated depupylation of Pup~PanB, while addition of pantothenate inhibited this reaction. In culture, media supplementation with pantothenate decreased PanB levels, which required CoaX. Collectively, we propose CoaX regulates PanB abundance in response to pantothenate levels by modulating its vulnerability to proteolysis by Mtb proteasomes.
PMID: 39585979
ISSN: 1091-6490
CID: 5763462

Arrhythmogenic Cardiomyopathy: Towards Genotype Based Diagnoses and Management

Muller, Steven A; Bertoli, Giorgia; Wang, Jianan; Gasperetti, Alessio; Cox, Moniek G P J; Calkins, Hugh; Riele, Anneline S J M Te; Judge, Daniel P; Delmar, Mario; Hauer, Richard N W; Boink, Gerard J J; Cerrone, Marina; Tintelen, J Peter van; James, Cynthia A
Arrhythmogenic cardiomyopathy (ACM) is a genetically heterogeneous inherited cardiomyopathy with an estimated prevalence of 1:5000-10 000 that predisposes patients to life-threatening ventricular arrhythmias (VA) and sudden cardiac death (SCD). ACM diagnostic criteria and risk prediction models, particularly for arrhythmogenic right ventricular cardiomyopathy (ARVC), the most common form of ACM, are typically genotype-agnostic, but numerous studies have established clinically meaningful genotype-phenotype associations. Early signs of ACM onset differ by genotype indicating the need for genotype-specific diagnostic criteria and family screening paradigms. Likewise, risk factors for SCD vary by genetic subtype, indicating that genotype-specific guidelines for management are also warranted. Of particular importance, genotype-specific therapeutic approaches are being developed. Results from a randomized controlled trial for flecainide use in ARVC patients are currently pending. Research in a plakophilin-2-deficient mouse model suggests this antiarrhythmic drug may be particularly useful for patients with likely pathogenic or pathogenic (LP/P) PKP2 variants. Additionally, the first gene therapy clinical trials in ARVC patients harboring LP/P PKP2 variants are currently underway. This review aims to provide clinicians caring for ACM patients with an up-to-date overview of the current literature in genotype-specific natural history of disease and management of ACM patients and describe scientific advances that have led to upcoming clinical trials.
PMID: 39623588
ISSN: 1540-8167
CID: 5804322

Immune checkpoint landscape of human atherosclerosis and influence of cardiometabolic factors

Barcia Durán, José Gabriel; Das, Dayasagar; Gildea, Michael; Amadori, Letizia; Gourvest, Morgane; Kaur, Ravneet; Eberhardt, Natalia; Smyrnis, Panagiotis; Cilhoroz, Burak; Sajja, Swathy; Rahman, Karishma; Fernandez, Dawn M; Faries, Peter; Narula, Navneet; Vanguri, Rami; Goldberg, Ira J; Fisher, Edward A; Berger, Jeffrey S; Moore, Kathryn J; Giannarelli, Chiara
Immune checkpoint inhibitor (ICI) therapies can increase the risk of cardiovascular events in survivors of cancer by worsening atherosclerosis. Here we map the expression of immune checkpoints (ICs) within human carotid and coronary atherosclerotic plaques, revealing a network of immune cell interactions that ICI treatments can unintentionally target in arteries. We identify a population of mature, regulatory CCR7+FSCN1+ dendritic cells, similar to those described in tumors, as a hub of IC-mediated signaling within plaques. Additionally, we show that type 2 diabetes and lipid-lowering therapies alter immune cell interactions through PD-1, CTLA4, LAG3 and other IC targets in clinical development, impacting plaque inflammation. This comprehensive map of the IC interactome in healthy and cardiometabolic disease states provides a framework for understanding the potential adverse and beneficial impacts of approved and investigational ICIs on atherosclerosis, setting the stage for designing ICI strategies that minimize cardiovascular disease risk in cancer survivors.
PMCID:11634783
PMID: 39613875
ISSN: 2731-0590
CID: 5762162

Describing cardiac anatomy: The truth is staring us in the face [Editorial]

Richardson, Travis D; Attia, Zachi Itzhak; Chorin, Ehud; Delmar, Mario; Di Biase, Luigi; Ellenbogen, Kenneth A; Ernst, Sabine; Gollob, Michael H; Indik, Julia H; Kannankeril, Prince J; Rosso, Raphael; Santangeli, Pasquale; Soejima, Kyoko; Stevenson, William G; Swerdlow, Charles D; Tung, Roderick; Vijayaraman, Pugazhendhi; Wilde, Arthur A M; Zipes, Douglas P; Viskin, Sami
PMID: 39613379
ISSN: 1556-3871
CID: 5804082

Chronic inflammation and vascular cell plasticity in atherosclerosis

Lin, Alexander; Miano, Joseph M; Fisher, Edward A; Misra, Ashish
Vascular smooth muscle cells, endothelial cells and macrophages undergo phenotypic conversions throughout atherosclerosis progression, both as a consequence of chronic inflammation and as subsequent drivers of it. The inflammatory hypothesis of atherosclerosis has been catapulted to the forefront of cardiovascular research as clinical trials have shown that anti-inflammatory therapy reduces adverse cardiovascular events. However, no current therapies have been specifically designed to target the phenotype of plaque cells. Fate mapping has revealed that plaque cells convert to detrimental and beneficial cell phenotypes during atherosclerosis, with cumulative evidence highlighting that vascular cell plasticity is intimately linked with plaque inflammation, ultimately impacting lesion stability. Here we review vascular cell plasticity during atherosclerosis in the context of the chronic inflammatory plaque microenvironment. We highlight the need to better understand how plaque cells behave during therapeutic intervention. We then propose modulating plaque cell phenotype as an unexplored therapeutic paradigm in the clinical setting.
PMID: 39653823
ISSN: 2731-0590
CID: 5762432

Mass Spectrometry Characterization of the Human Ankle and Hindfoot Fracture Microenvironment in Young and Aged Subjects

Dankert, John F; Mehta, Devan D; Rodrick, Tori C; Kanshin, Evgeny; Parola, Rown; Ueberheide, Beatrix M; Jones, Drew R; Egol, Kenneth A; Leucht, Philipp
BACKGROUND/UNASSIGNED:Bone regeneration following a fracture is dependent on multiple factors including skeletal stem cells (SSCs). Recruitment, proliferation, and differentiation of the SSCs is guided by the proteins and metabolites found within the fracture microenvironment. Understanding how intrinsic factors affect the fracture microenvironment has been a topic of ongoing investigation. This study sought to determine whether the levels of select proteins and metabolites within the fracture hematoma would be differentially expressed depending on the age of the patient. We hypothesized that a distinct set of proteins and metabolites found within the fracture hematoma microenvironment would be present at varying levels depending on patient age. METHODS/UNASSIGNED:The research study was reviewed and approved by an Institutional Review Board. Hematomas were collected from subjects aged 18 years old or older undergoing surgical intervention for a fracture. Hematoma samples were selected from the biorepository and assigned to one of two fracture groups including young ankle/hindfoot and aged ankle/hindfoot. Protein and metabolite levels within each hematoma were analyzed by liquid chromatography-mass spectrometry. RESULTS/UNASSIGNED:A total of seven hematomas were included in each the young ankle/hindfoot and aged ankle/hindfoot groups. From the global metabolomic analysis, creatine, 2-methylindoline, and acetyl-L-carnitine were identified as being differentially expressed between both groups. An untargeted metabolomic analysis of the two groups identified significant differences in the levels of an additional 66 metabolites. Proteomic analysis identified 34 proteins that were expressed at significantly different levels. CONCLUSIONS/UNASSIGNED:The level of metabolites and proteins found within the local fracture environment vary by patient age. Future investigations will focus on identifying a role for these proteins and metabolites in bone homeostasis and fracture healing. LEVEL OF EVIDENCE/UNASSIGNED:N/A, basic science investigation. SUPPLEMENTARY INFORMATION/UNASSIGNED:The online version contains supplementary material available at 10.1007/s43465-024-01284-3.
PMCID:11628468
PMID: 39664353
ISSN: 0019-5413
CID: 5762832

MCP-1 in synovial fluid as a predictor of inferior clinical outcomes after meniscectomy

Wolfe, Isabel; Egol, Alexander J; Moore, Michael R; Isber, Ryan; Kaplan, Daniel J; Kirsch, Thorsten; Strauss, Eric J
PURPOSE/OBJECTIVE:To evaluate knee intra-articular cytokine concentrations in patients undergoing isolated meniscectomy and determine if these concentrations are associated with clinical outcomes. METHODS:Concentrations of ten biomarkers were quantified in synovial fluid aspirated from the operative knees of patients who underwent isolated meniscectomy from 10/2011-12/2019. Patients completed a survey at final follow-upincluding VAS, Lysholm, Tegner, and KOOS Physical Function Short Form (KOOS-PS). Failure was defined as subsequent TKA or non-achievement of the Patient Acceptable Symptom State (PASS) for knee pain defined as VAS > 27/100. Regression analysis investigating the relationship between cytokine concentrations and failure was performed. RESULTS:[25.5, 32.4], and a mean follow-up of 8.0 ± 2.2 years. There were no demographic or clinical differences between failures (n = 41) and non-failures (n = 59) at baseline. Monocyte Chemotactic Protein 1 (MCP-1) concentration was significantly higher in failures than in non-failures (344.3 pg/ml vs. 268.6 pg/ml, p = 0.016). In a regression analysis controlling for age, sex, BMI, symptom duration, length of follow-up, and ICRS grade, increased MCP-1 was associated with increased odds of failure (p = 0.002). CONCLUSIONS:The concentration of MCP-1 on the day of arthroscopic meniscectomy was predictive of failure as defined by an unacceptable pain level at intermediate- to long-term follow-up. This finding may help identify patients at high risk for poor postoperative outcomes following isolated meniscectomy and serve as a target for future postoperative immunomodulation research.
PMID: 39326121
ISSN: 1873-5800
CID: 5763302

Hyperchylomicronemia causes endothelial cell inflammation and increases atherosclerosis

Izquierdo, Maria Concepcion; Cabodevilla, Ainara G; Basu, Debapriya; Nasias, Dimitris; Kanter, Jenny E; Ho, Winnie; Gjini, Jana; Fisher, Edward A; Kim, Jeffrey; Lee, Warren; Bornfeldt, Karin E; Goldberg, Ira J
The effect of increased triglycerides (TGs) as an independent factor in atherosclerosis development has been contentious, in part, because severe hypertriglyceridemia associates with low levels of low-density lipoprotein cholesterol (LDL-C). To test whether hyperchylomicronemia, in the absence of markedly reduced LDL-C levels, contributes to atherosclerosis, we created mice with induced whole-body lipoprotein lipase (LpL) deficiency combined with LDL receptor (LDLR) deficiency. On an atherogenic Western-type diet (WD), male and female mice with induced global LpL deficiency (iLpl -/-) and LDLR knockdown (Ldlr
PMCID:11623764
PMID: 39649171
ISSN: 2693-5015
CID: 5769492

Pathophysiologic abnormalities in transgenic mice carrying the Alzheimer disease PSEN1 Δ440 mutation

Fuller, Peyton E; Collis, Victoria L; Sharma, Pallavi; Burkett, Angelina M; Wang, Shaoteng; Brown, Kyle A; Weir, Nick; Goulbourne, Chris N; Nixon, Ralph A; Longden, Thomas A; Gould, Todd D; Monteiro, Mervyn J
Mutations in PSEN1 were first discovered as a cause of Alzheimer's disease (AD) in 1995, yet the mechanism(s) by which the mutations cause disease still remains unknown. The generation of novel mouse models assessing the effects of different mutations could aid in this endeavor. Here we report on transgenic mouse lines made with the Δ440 PSEN1 mutation that causes AD with parkinsonism:- two expressing the un-tagged human protein and two expressing a HA-tagged version. Detailed characterization of these lines showed that Line 305 in particular, which expresses the untagged protein, develops age-dependent memory deficits and pathologic features, many of which are consistent with features found in AD. Key behavioral and physiological alterations found in the novel 305 line included an age-dependent deficit in spontaneous alternations in the Y-maze, a decrease in exploration of the center of an open field box, a decrease in the latency to fall on a rotarod, a reduction in synaptic strength and pair-pulse facilitation by electrophysiology, and profound alterations to cerebral blood flow regulation. The pathologic alterations found in the line included, significant neuronal loss in the hippocampus and cortex, astrogliosis, and changes in several proteins involved in synaptic and mitochondrial function, Ca2+ regulation, and autophagy. Taken together, these findings suggest that the transgenic lines will be useful for the investigation of AD pathogenesis.
PMCID:11578115
PMID: 39323410
ISSN: 1460-2083
CID: 5757872

Spns1 is an iron transporter essential for megalin-dependent endocytosis

Beenken, Andrew; Shen, Tian; Jin, Guangchun; Ghotra, Aryan; Xu, Katherine; Nesanir, Kivanc; Sturley, Rachel E; Vijayakumar, Soundarapandian; Kahn, Atlas; Levitman, Abraham; Stauber, Jacob; Chavez, Estefania Y; Robbins-Juarez, Shelief Y; Hao, Luke; Field, Thomas B; Erdjument-Bromage, Hediye; Neubert, Thomas A; Shapiro, Lawrence; Qiu, Andong; Barasch, Jonathan
Proximal tubule endocytosis is essential to produce protein free urine as well as to regulate system wide metabolic pathways, such as the activation of Vitamin D. We have determined that the proximal tubule expresses an endolysosomal membrane protein, protein spinster homolog1 (Spns1), which engenders a novel iron conductance that is indispensable during embryonic development. Conditional knockout of Spns1 with a novel Cre-LoxP construct specific to megalin-expressing cells led to the arrest of megalin receptor-mediated endocytosis as well as dextran pinocytosis in proximal tubules. The endocytic defect was accompanied by changes in megalin phosphorylation as well as enlargement of lysosomes confirming previous findings in Drosophila and Zebrafish. The endocytic defect was also accompanied by iron overload in proximal tubules. Remarkably, iron levels regulated the Spns1 phenotypes, because feeding an iron deficient diet or mating Spns1 knockout with divalent metal transporter1 (DMT1) knockout rescued the phenotypes. Conversely, iron loading wild type mice reproduced the endocytic defect, These data demonstrate a reversible, negative feedback for apical endocytosis, and raise the possibility that regulation of endocytosis, pinocytosis, megalin activation, and organellar size and function is nutrient-responsive.
PMID: 39265081
ISSN: 1522-1466
CID: 5690582