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Department/Unit:Neuroscience Institute

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Local phase coherence and the perception of blur

Chapter by: Wang, Zhou; Simoncelli, Eero P.
in: Advances in Neural Information Processing Systems by
[S.l.] : Neural information processing systems foundation, 2004
pp. ?-?
ISBN: 9780262201520
CID: 2872912

Maximum likelihood estimation of a stochastic integrate-and-fire neural model

Chapter by: Pillow, Jonathan W.; Paninski, Liam; Simoncelli, Eero P.
in: Advances in Neural Information Processing Systems by
[S.l.] : Neural information processing systems foundation, 2004
pp. ?-?
ISBN: 9780262201520
CID: 2872922

Genomic structure, cochlear expression, and mutation screening of KCNK6, a candidate gene for DFNA4

Mhatre, Anand N; Li, Jiang; Chen, Arthur F; Yost, C Spencer; Smith, Richard J H; Kindler, Christoph H; Lalwani, Anil K
KCNK6 encodes a tandem pore domain potassium channel, TWIK-2, that maps to chromosome 19. Both STS and linkage maps established KCNK6 as a positional candidate gene for DFNA4, a form of autosomal dominant nonsyndromic hereditary hearing loss. Identification and characterization of Kcnk6 expression within the mammalian cochlea established the gene as a functional candidate for DFNA4. Identification of Twik-2 expression in the mouse cochlea was initially established via RT-PCR assay of cochlear RNA. Subsequent immunoblot analysis of cochlear homogenate yielded a distinct 35-kDa band corresponding to the calculated molecular weight of the mouse Twik-2. Immunohistochemical studies localized Twik-2 expression in the cochlea predominantly within the stria vascularis. This vascular tissue borders the cochlear duct and is a critical regulator of potassium concentration in the endolymph. Genomic structure of TWIK-2 was subsequently determined and shown to consist of three coding exons with splice acceptor and donor sites in accordance with the consensus GT-AG rule. Two separate DFNA4 families were screened for KCNK6 sequence alterations. No mutations were found, thus excluding TWIK-2 as the DFNA4 candidate disease gene. Nevertheless, expression of Twik-2 within the stria vascularis suggests a potential role for this protein as one of the terminal components of the potassium ion-recycling pathway that contributes toward its reabsorption into the endolymph
PMID: 14689445
ISSN: 0360-4012
CID: 45381

Perceptual learning and nonword repetition using a cochlear implant simulation

Burkholder R; Pisoni D; Svirsky M
This study examined the effects of perceptual learning on nonword repetition performance of normal-hearing listeners who were exposed to severely degraded auditory conditions that were designed to simulate the auditory input of a cochlear implant. Twenty normal-hearing adult listeners completed a nonword repetition task using an eight-band, frequency-shifted cochlear implant simulation strategy both before and after training on open- and closed-set word recognition tasks. Feedback was provided during training. The nonword responses obtained from each participant were digitally recorded and played back to normal-hearing listeners. These listeners rated the nonword repetition accuracy in comparison to the original unprocessed target stimuli using a seven-point scale. The mean nonword accuracy ratings were significantly higher for the non words repeated after training than for non words repeated prior to training. These results suggest that the word recognition training tasks encouraged auditory perceptual learning that generalized to novel, nonword auditory stimuli. The present findings also suggest that adaptation and learning from the degraded auditory stimuli produced by a cochlear implant simulation can be achieved even in a difficult perceptual-motor task such as nonword repetition which involves both speech perception and production of an auditory stimulus that lacks any lexical or semantic representation
PMCID:3068202
PMID: 21461136
ISSN: 0531-5131
CID: 133309

Prevention of apoptotic but not necrotic cell death following neuronal injury by neurotrophins signaling through the tyrosine kinase receptor

Kim, Dong H; Zhao, Xiurong; Tu, Christina H; Casaccia-Bonnefil, Patrizia; Chao, Moses V
OBJECT: Neurotrophins prevent the death of neurons during embryonal development and have potential as therapeutic agents. During development, neuronal death occurs only by apoptosis and not by necrosis. Following injury, however, neurons can die by both processes. Data from prior studies have not clearly indicated whether neurotrophins can decrease apoptosis compared with necrosis. The goal of this study was to determine the effect of neurotrophin treatment on each of these processes following injury and to characterize the receptor(s) required. METHODS: The authors used an in vitro model of injury with the aid of primary cortical neurons obtained from rat embryos. After 9 days in culture and the elimination of glia, homogeneous and mature neurons were available for experimentation. Noxious stimuli were applied, including radiation, hypoxia, and ischemia. Subsequent cell death by apoptosis or necrosis was noted based on morphological and enzymatic assessments (such as lactate dehydrogenase [LDH] release) and assays for DNA fragmentation. The effect of treatment with nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and neurotrophin-3 was determined. Finally, Western blot analyses were performed to note the neurotrophin receptor status in the neurons (tyrosine kinase receptors [Trks] and p75). The authors studied different stimuli-induced cell death by using different processes. With the application of radiation, cells died primarily by apoptosis, as evidenced by cell shrinkage, the presence of apoptotic bodies, and specific DNA fragmentation. This was a delayed process (> 6 hours) that could be reduced by gene transcription or protein synthesis inhibitors. With ischemia, cells died immediately by necrosis, showing cell enlargement and rupture. Ischemic cell death was not affected by the inhibition of macromolecular synthesis. Hypoxia produced a mixture of the two cell death processes. Both BDNF and neurotrophin-3 demonstrated protection against apoptotic cell death only. Statistically significant decreases of both LDH release and apoptosis-specific DNA fragmentation were noted following radiation and hypoxia, but not for ischemia. Nerve growth factor, unlike the other neurotrophins, did not affect apoptosis because a functional receptor, Trk A, was not expressed by the cortical neurons. There was expression of both Trk B and Trk C, which bind BDNF and neurotrophin-3. CONCLUSIONS: These findings have significant clinical implications. Neurotrophins may only be effective in disorders in which apoptosis, and not necrosis, is the major process. Furthermore, the Trk signaling cascade must be activated for this response to occur. Because the expression of these receptors diminishes in adulthood, neurotrophin application may be most appropriate in the pediatric population
PMID: 14743916
ISSN: 0022-3085
CID: 66613

Flow artifacts in steady-state free precession cine imaging

Storey, Pippa; Li, Wei; Chen, Qun; Edelman, Robert R
Steady-state free precession (SSFP) cardiac cine images are frequently corrupted by dark flow artifacts, which can usually be eliminated by reshimming and retuning the scanner. A theoretical explanation for these artifacts is provided in terms of spins moving through an off-resonant point in the magnetic field, and the theory is validated using phantom experiments. The artifacts can be reproduced in vivo by detuning the center frequency by an amount in the range of half the inverse repetition time (TR). Since this offset is similar in magnitude to the frequency difference between the water and lipid peaks, a likely cause of the artifacts in vivo is that the center frequency is tuned incorrectly to the lipid peak rather than the water peak
PMID: 14705051
ISSN: 0740-3194
CID: 47865

Developmental differences in the effects of beta-adrenergic receptor agonists on calcium transients and sodium-calcium exchange currents [Meeting Abstract]

Mancarella, S; Coetzee, W; Artman, M
ISI:000187971202864
ISSN: 0006-3495
CID: 42462

K-ATP channels regulate ET-1 release in human coronary arterial endothelial cells [Meeting Abstract]

Ghiu, IA; Yoshida, H; Feig, J; Morrissey, A; Coetzee, WA
ISI:000187971202273
ISSN: 0006-3495
CID: 42459

Native K-ATP channels in human coronary artery endothelial cells consist of a heteromultimeric complex of Kir6.1, Kir6.2, and SUR2B subunits [Meeting Abstract]

Yoshida, H; Feig, JE; Coetzee, WA
ISI:000187971202272
ISSN: 0006-3495
CID: 42458

Developmental expression of phospholemman in rabbit and mouse heart [Meeting Abstract]

Srivastava, S; Coetzee, WA; Cala, SE; Artman, M
ISI:000187971201346
ISSN: 0006-3495
CID: 42457