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Effect of green tea catechins in prostate cancer chemoprevention. [Meeting Abstract]

Kumar, Nagi B; Pow-Sang, Julio; Egan, Kathleen; Spiess, Philippe E; Dickinson, Shohreh I; Salup, Raoul; Helal, Mohamed; McLarty, Jerry; Williams, Christopher R; Schreiber, Fred James; Parnes, Howard; Sebti, Said; Kazi, Aslam; Kang, Loveleen; Quinn, Gwendolyn P; Smith, Tiffany; Yue, Binglin; Chornokur, Ganna; Crocker, Theresa; Schell, Michael J
ISI:000358036900439
ISSN: 1527-7755
CID: 2589162

Homology modeling and explicit membrane molecular dynamics simulation to delineate the mode of binding of thiazolidinediones into FFAR1 and the mechanism of receptor activation

Helal, Mohamed A; Darwish, Khaled M; Hammad, Mohamed A
Free fatty acid receptor 1 (FFAR1) is a member of a previously characterized cluster of orphan G protein-coupled receptors (GPCRs). Later, this orphan receptor was identified as a target of medium- to long-chain free fatty acids in beta-cells of the pancreas. Administration of FFAR1 agonists has been proved to potentiate glucose-stimulated insulin secretion from pancreatic beta-cells. It was reported that some thiazolidinediones (TZDs), the best studied PPARgamma agonists, are also able to stimulate FFAR1 in a dose-dependent manner. In the present study, a homology model of the human FFAR1 was constructed and inserted into a pre-equilibrated DPPC/TIP3P membrane system. This system was then simulated for 20 ns in complex with the FFAR1 agonist GW9085, as well as rosiglitazone and pioglitazone. We noticed that the salt bridge between Glu172 and Arg258 and the H bond between Glu145 and His153 could be responsible for the stabilization of the receptor in the inactive state. Moreover, we described for the first time the binding mode of TZDs in the binding site of FFAR1. The thiazolidinedione head forms a hydrogen bonding network with the critical polar residues in the binding site, Arg258 and Asn244, while the rest of the molecule is embedded into the receptor hydrophobic pocket. Based on this modeling study, we arrived at a proposal of the pharmacophore required for binding to both PPARgamma and FFAR1. Insights gained from this investigation should provide future directions for the design of novel dual acting antidiabetic agents.
PMID: 25441945
ISSN: 1464-3405
CID: 2035832

Effect of clasp design on retention at different intervals using different abutment materials and in a simulated oral condition

Helal, Mohamed A; Baraka, Osama A; Sanad, Mohamed E; Al-Khiary, Yasser; Ludwig, Klaus; Kern, Matthias
PURPOSE: The purpose of this study was to compare the retention of circlet (E) clasps and back-action clasps against three abutment surface materials during long-term simulation of attachment and detachment. MATERIAL AND METHODS: Forty-eight test models were constructed by placing premolars (natural abutments or metal dies) inside metal blocks to test different abutment retention surface materials (sound enamel, composite resin, and glass-ceramic; 16 each). The models were duplicated into investment models for construction of circlet (E) and back-action clasps. Removal and insertion cycling of clasps was carried out for 250, 500, 1000, 2000, 4000, 8000, and 16,000 cycles. The retention of each clasp was measured before cycling and after each interval. Data were analyzed using 1-way-ANOVA, 2-way-ANOVA, and Mann-Whitney U tests. RESULTS: No significant differences in retention of either clasp were found between the three abutment material surfaces; however, there was a significant decrease in retention force of the circlet (E) clasp between 1000 and 2000 cycles but not of the back-action clasp. CONCLUSIONS: (1) The back-action clasp maintains its retention force for a longer period than the circlet (E) clasp. (2) Composite resin contouring of teeth provided retention comparable to enamel and a ceramic material.
PMID: 23890209
ISSN: 1532-849x
CID: 2035362

Design, synthesis, and enzyme kinetics of novel benzimidazole and quinoxaline derivatives as methionine synthase inhibitors

Elshihawy, Hosam; Helal, Mohamed A; Said, Mohamed; Hammad, Mohamed A
Methionine synthase catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine, producing methionine and tetrahydrofolate. Benzimidazole and deazatetrahydrofolates derivatives have been shown to inhibit methionine synthase by competing with the substrate 5-methyltetrahydrofolate. In this study, a novel series of substituted benzimidazoles and quinoxalines were designed and assessed for inhibitory activity against purified rat liver methionine synthase using a radiometric enzyme assay. Compounds 3g, 3j, and 5c showed the highest activity against methionine synthase (IC(5)(0): 20 muM, 18 muM, 9 muM, respectively). Kinetic analysis of these compounds using Lineweaver-Burk plots revealed characteristics of mixed inhibition for 3g and 5c; and uncompetitive inhibition for 3j. Docking study into a homology model of the rat methionine synthase gave insights into the molecular determinants of the activity of this class of compounds. The identification of these drug-like inhibitors could lead the design of the next generation modulators of methionine synthase.
PMID: 24268539
ISSN: 1464-3391
CID: 2035472

Differential binding of latrunculins to G-actin: a molecular dynamics study

Helal, Mohamed A; Khalifa, Sherief; Ahmed, Safwat
Latrunculins are unique macrolides containing a thiazolidinone moiety. Latrunculin A (1), latrunculin B (2), 16-epi-latrunculin B (3), and latrunculin T (4) were isolated from the Red Sea sponge Negombata magnifica. In the present study, after testing compounds 2-4 for cytotoxic activity, they were docked into the crystal structure of G-actin and subjected to binding energy calculation and a 20 ns MD simulation. The modeling study shows that latrunculins binding depends on both hydrophobic interaction of the macrocycle as well as H bonding of the thiazolidinone ring with Asp157 and Thr186. It was noticed that epimerization at C16 of latrunculin B was well tolerated as it could form an alternative H bonding network. However, opening of the macrocyclic ring deteriorates the actin binding due to reduced hydrophobicity. MD simulation showed that latrunculin B (2) possesses a more significant stabilizing effect on G-actin than latrunculin T (4) and could efficiently hinder the flattening transition of G-actin into F-actin. These findings could explain, at the molecular level, the impact of epimerization and macrolide ring-opening on latrunculins activity, an issue that has not been addressed before. Also, the study gives insights into the mechanism of cytotoxicity of diverse latrunculins and provides direction for future lead optimization studies.
PMID: 23988111
ISSN: 1549-960x
CID: 2035392

Combined receptor-based and ligand-based approach to delineate the mode of binding of guaianolide-endoperoxides to PfATP6

Helal, Mohamed A; Avery, Mitchell A
Plasmodium falciparum calcium-ATPase (PfATP6) has been reported to be a target of artemisinin and related endoperoxides. In this study, a series of previously reported guaianolide-endoperoxides (thaperoxides) were docked into a homology model of PfATP6 and also used to develop a pharmacophore model. This combined approach led to useful insights into the binding determinants of thaperoxides to the malarial enzyme. In addition, in silico mutagenesis and molecular dynamics suggested the importance of Phe264 and the electrostatic interactions between Lys260 in helix H3 and Lys1036 and Asp1038 in L6/7 loop for the binding of thaperoxides. These results could help in the design of more potent inhibitors of PfATP6.
PMID: 22877631
ISSN: 1464-3405
CID: 2035192

Effects of long-term simulated RPD clasp attachment/detachment on retention loss and wear for two clasp types and three abutment material surfaces

Helal, Mohamed A; Baraka, Osama A; Sanad, Mohamed E; Ludwig, Klaus; Kern, Matthias
PURPOSE: The purpose of this in vitro study was to measure the loss of retention and wear of two clasp types (E-circlet, back action) against three abutment materials (enamel, composite, CAD/CAM ceramic) after 16,000 simulated cycles of attachment-detachment. MATERIALS AND METHODS: Forty-eight models were constructed by placing either an upper first premolar or a metal die inside a metal rectangular block. Models were divided according to the abutment teeth into three groups. Group E consisted of 16 unrestored human premolars with sound enamel. Group R had 16 premolars recontoured buccally using composite resin. Group C had 16 metal dies (duplicated from a human premolar) covered by CAD/CAM all-ceramic crowns. On the models, E-circlet (E) and back-action (B) clasps were constructed to engage the model's teeth. Withdrawal and insertion cycling of clasps was carried out for 16,000 cycles by using a chewing simulator. The retention force of each clasp was measured after cycling. An acrylic replica was made for each abutment retention surface before and after cycling. Each replica was examined by SEM, and the wear areas were measured. The data were analyzed statistically using one-way ANOVA, two-way ANOVA, and Mann-Whitney tests. RESULTS: There was no significant retention loss after 16,000 cycles (p>/= 0.05) of both clasps (E, B) on the three abutment materials (E, R, C). The mean of wear areas in mm(2) were 1.83 +/- 0.36, 0.85 +/- 0.66, 2.37 +/- 1.88, 1.7 +/- 1.11, 0.6 +/- 0.2, and 0.06 +/- 0 for EE, BE, ER, BR, EC, and BC, respectively. There were significant differences among the wear areas of the abutment surface of the six subgroups (p
PMID: 22443158
ISSN: 1532-849x
CID: 2035092

Challenges and potential solutions to meeting accrual goals in a Phase II chemoprevention trial for prostate cancer

Kumar, Nagi; Crocker, Theresa; Smith, Tiffany; Pow-Sang, Julio; Spiess, Philippe E; Egan, Kathleen; Quinn, Gwen; Schell, Michael; Sebti, Said; Kazi, Aslam; Chuang, Tian; Salup, Raoul; Helal, Mohamed; Zagaja, Gregory; Trabulsi, Edouard; McLarty, Jerry; Fazili, Tajammul; Williams, Christopher R; Schreiber, Fred; Slaton, Joel; Anderson, J Kyle
OBJECTIVE: The goal of this report is to describe the on going strategies, successes, challenges and solutions for recruitment in this multi-center, phase II chemoprevention trial targeting men at high risk for prostate cancer. METHODS: We developed and implemented a multi-center clinical trial in institutions with supportive infrastructure, lead by a recruitment team of experienced and committed physicians and clinical trial staff, implementing multi-media and community outreach strategies to meet recruitment goals. Screening logs were reviewed to identify trends as well as patient, protocol and infrastructure -related barriers impacting accrual and revisions to protocol implemented. RESULTS: Between January 2008 and February 2011 a total of 3547 individuals were prescreened with 94% (n=3092) determined to be ineligible based on diagnosis of cancer or benign biopsy results. Of these, 216 were considered eligible for further screening with 52% (n=113) declining to participate due to patient related factors and 14% (n=29) eliminated due to protocol-related criteria for exclusion. Ninety-four (94) subjects consented to participate with 34% of these subjects (n=74) meeting all eligibility criteria to be randomized to receive study agent or placebo. Across all sites, 99% of the recruitment of subjects in this clinical trial is via physician recruitment and referral with less than 1% responding to other recruitment strategies. CONCLUSION: A contemporary approach to subject recruitment and frequent evaluation is needed to assure responsiveness to emerging challenges to accrual and the evolving scientific literature. A focus on investing on improving systems for physician recruitment may be key to meeting recruitment target in chemoprevention trials.
PMCID:3268882
PMID: 22101219
ISSN: 1559-2030
CID: 2588672

Prostate Cancer Chemoprevention Targeting Men with High-Grade Prostatic Intraepithelial Neoplasia (HGPIN) and Atypical Small Acinar Proliferation (ASAP): Model for Trial Design and Outcome Measures

Kumar, Nagi; Crocker, Theresa; Smith, Tiffany; Connors, Shahnjayla; Pow-Sang, Julio; Spiess, Philippe E; Egan, Kathleen; Quinn, Gwen; Schell, Michael; Sebti, Said; Kazi, Aslam; Chuang, Tian; Salup, Raoul; Helal, Mohamed; Zagaja, Gregory; Trabulsi, Edouard; McLarty, Jerry; Fazili, Tajammul; Williams, Christopher R; Schreiber, Fred; Anderson, Kyle
In spite of the large number of nutrient-derived agents demonstrating promise as potential chemopreventive agents, most have failed to prove effectiveness in clinical trials. Critical requirements for moving nutrient-derived agents to recommendation for clinical use include adopting a systematic, molecular-mechanism based approach and utilizing the same ethical and rigorous methods such as are used to evaluate other pharmacological agents. Preliminary data on a mechanistic rationale for chemoprevention activity as observed from epidemiological, in vitro and preclinical studies, phase I data of safety in suitable cohorts, duration of intervention based on time to progression of preneoplastic disease to cancer and the use of a valid panel of biomarkers representing the hypothesized carcinogenesis pathway for measuring efficacy must inform the design of phase II clinical trials. The goal of this paper is to provide a model for evaluating a well characterized agent- Polyphenon E- in a phase II clinical trial of prostate cancer chemoprevention.
PMCID:3924733
PMID: 24533253
ISSN: 2167-0870
CID: 2588662

New insights into the binding mode of melanin concentrating hormone receptor-1 antagonists: homology modeling and explicit membrane molecular dynamics simulation study

Helal, Mohamed A; Chittiboyina, Amar G; Avery, Mitchell A
Melanin concentrating hormone (MCH) is a cyclic 19-amino-acid peptide expressed mainly in the hypothalamus. It is involved in the control of feeding behavior, energy homeostasis, and body weight. Administration of MCH-R1 antagonists has been proved to reduce food intake and cause weight loss in animal models. In the present study, a homology model of the human MCH-R1 was constructed using the crystal structure of bovine rhodopsin (PDB: 1u19) as a template. Based on the observation that MCH-R1 can bind ligands of high chemical diversity, the initial model was subjected to an extensive ligand-supported refinement using antagonists of different chemotypes. The refinement process involved stepwise energy minimizations and molecular dynamics simulations. The refined model was inserted into a pre-equilibrated DPPC/TIP3P membrane system and then simulated for 20 ns in complex with structurally diverse antagonists. This protocol was able to explain the SAR of MCH-R1 antagonists with diverse chemical structures. Moreover, it reveals new insights into the critical recognition sites within the receptor. This work represents the first detailed study of molecular dynamics of MCH-R1 inserted into a membrane-aqueous environment.
PMCID:3090266
PMID: 21370821
ISSN: 1549-960x
CID: 2034922