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105


Evaluation of Parallel Level Sets and Bowsher's Method as Segmentation-Free Anatomical Priors for Time-of-Flight PET Reconstruction

Schramm, Georg; Holler, Martin; Rezaei, Ahmadreza; Vunckx, Kathleen; Knoll, Florian; Bredies, Kristian; Boada, Fernando; Nuyts, Johan
In this article, we evaluate Parallel Level Sets (PLS) and Bowsher's method as segmentation-free anatomical priors for regularized brain positron emission tomography (PET) reconstruction. We derive the proximity operators for two PLS priors and use the EM-TV algorithm in combination with the first order primal-dual algorithm by Chambolle and Pock to solve the non-smooth optimization problem for PET reconstruction with PLS regularization. In addition, we compare the performance of two PLS versions against the symmetric and asymmetric Bowsher priors with quadratic and relative difference penalty function. For this aim, we first evaluate reconstructions of 30 noise realizations of simulated PET data derived from a real hybrid positron emission tomography/magnetic resonance imaging (PET/MR) acquisition in terms of regional bias and noise. Second, we evaluate reconstructions of a real brain PET/MR data set acquired on a GE Signa time-of-flight PET/MR in a similar way. The reconstructions of simulated and real 3D PET/MR data show that all priors were superior to post-smoothed maximum likelihood expectation maximization with ordered subsets (OSEM) in terms of bias-noise characteristics in different regions of interest where the PET uptake follows anatomical boundaries. Our implementation of the asymmetric Bowsher prior showed slightly superior performance compared with the two versions of PLS and the symmetric Bowsher prior. At very high regularization weights, all investigated anatomical priors suffer from the transfer of non-shared gradients.
PMCID:5821901
PMID: 29408787
ISSN: 1558-254x
CID: 2979222

Evaluation of SparseCT on patient data using realistic undersampling models

Chapter by: Chen, Baiyu; Muckley, Matthew; Sodickson, Aaron; O'Donnell, Thomas; Knoll, Florian; Sodickson, Daniel; Otazo, Ricardo
in: MEDICAL IMAGING 2018: PHYSICS OF MEDICAL IMAGING by ; Lo, JY; Schmidt, TG; Chen, GH
BELLINGHAM : SPIE-INT SOC OPTICAL ENGINEERING, 2018
pp. ?-?
ISBN: 978-1-5106-1636-3
CID: 3290392

Low rank alternating direction method of multipliers reconstruction for MR fingerprinting

Asslander, Jakob; Cloos, Martijn A; Knoll, Florian; Sodickson, Daniel K; Hennig, Jurgen; Lattanzi, Riccardo
PURPOSE: The proposed reconstruction framework addresses the reconstruction accuracy, noise propagation and computation time for magnetic resonance fingerprinting. METHODS: Based on a singular value decomposition of the signal evolution, magnetic resonance fingerprinting is formulated as a low rank (LR) inverse problem in which one image is reconstructed for each singular value under consideration. This LR approximation of the signal evolution reduces the computational burden by reducing the number of Fourier transformations. Also, the LR approximation improves the conditioning of the problem, which is further improved by extending the LR inverse problem to an augmented Lagrangian that is solved by the alternating direction method of multipliers. The root mean square error and the noise propagation are analyzed in simulations. For verification, in vivo examples are provided. RESULTS: The proposed LR alternating direction method of multipliers approach shows a reduced root mean square error compared to the original fingerprinting reconstruction, to a LR approximation alone and to an alternating direction method of multipliers approach without a LR approximation. Incorporating sensitivity encoding allows for further artifact reduction. CONCLUSION: The proposed reconstruction provides robust convergence, reduced computational burden and improved image quality compared to other magnetic resonance fingerprinting reconstruction approaches evaluated in this study. Magn Reson Med, 2017. (c) 2017 International Society for Magnetic Resonance in Medicine.
PMCID:5585028
PMID: 28261851
ISSN: 1522-2594
CID: 2476912

VARIATIONAL DEEP LEARNING FOR LOW-DOSE COMPUTED TOMOGRAPHY [Meeting Abstract]

Kobler, Erich; Muckley, Matthew; Chen, Baiyu; Knoll, Florian; Hammernik, Kerstin; Pock, Thomas; Sodickson, Daniel; Otazo, Ricardo
ISI:000446384606169
ISSN: 1520-6149
CID: 4533932

Machine learning for medical image reconstruction : first International Workshop, MLMIR 2018, held in conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings

Knoll, Florian; Maier, Andreas; Rueckert, Daniel
Cham, Switzerland : Springer, 2018
Extent: x, 158 p
ISBN: 303000130x
CID: 4535192

Preface

Chapter by: Knoll, Florian; Maier, Andreas; Rueckert, Daniel
in: Machine learning for medical image reconstruction : first International Workshop, MLMIR 2018, held in conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings by Knoll, Florian; Maier, Andreas; Rueckert, Daniel (Eds)
Cham, Switzerland : Springer, 2018
pp. ?-?
ISBN: 303000130x
CID: 4535202

PET reconstruction with non-smooth gradient-based priors

Chapter by: Schramm, G.; Holler, M.; Koesters, T.; Boada, F.; Knoll, F.; Bredies, K.; Nuyts, J.
in: 2016 IEEE Nuclear Science Symposium, Medical Imaging Conference and Room-Temperature Semiconductor Detector Workshop, NSS/MIC/RTSD 2016 by
[S.l.] : Institute of Electrical and Electronics Engineers Inc., 2017
pp. ?-?
ISBN: 9781509016426
CID: 4534142

Joint MR-PET Reconstruction Using a Multi-Channel Image Regularizer

Knoll, Florian; Holler, Martin; Koesters, Thomas; Otazo, Ricardo; Bredies, Kristian; Sodickson, Daniel K
While current state of the art MR-PET scanners enable simultaneous MR and PET measurements, the acquired data sets are still usually reconstructed separately. We propose a new multi-modality reconstruction framework using second order Total Generalized Variation (TGV) as a dedicated multi-channel regularization functional that jointly reconstructs images from both modalities. In this way, information about the underlying anatomy is shared during the image reconstruction process while unique differences are preserved. Results from numerical simulations and in-vivo experiments using a range of accelerated MR acquisitions and different MR image contrasts demonstrate improved PET image quality, resolution, and quantitative accuracy.
PMCID:5218518
PMID: 28055827
ISSN: 1558-254x
CID: 2529462

L2 or not L2: impact of loss function design for deep learning MRI reconstruction [Meeting Abstract]

Hammernik, Kerstin; Knoll, Florian; Sodickson, Daniel K; Pock, Thomas
ORIGINAL:0014693
ISSN: 1524-6965
CID: 4534392

SparseCT: Interrupted-beam acquisition and sparse reconstruction for radiation dose reduction [Meeting Abstract]

Koesters, Thomas; Knoll, Florian; Sodickson, Aaron; Sodickson, Daniel K.; Otazo, Ricardo
ISI:000405562100025
ISSN: 0277-786x
CID: 4533852